RnoINT0134282 @ rn6
Intron Retention
Gene
ENSRNOG00000037871 | Sfxn5
Description
sideroflexin 5 [Source:RGD Symbol;Acc:628706]
Coordinates
chr4:117048712-117049564:-
Coord C1 exon
chr4:117049511-117049564
Coord A exon
chr4:117048769-117049510
Coord C2 exon
chr4:117048712-117048768
Length
742 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TCTCTCCTTGTTGCCTTCAGTGG
3' ss Score
8.62
Exon sequences
Seq C1 exon
GTCGTGGGACTTCTCTTGCCTAACCAGACCCTGGCATCCACTGTCTTCTGGCAG
Seq A exon
GTAAGAGTCTGTGCAGCAGGCTCCTGAGGGTGCGCGTGCACACACACACACACACTCACACACACACACACACACATACACACACACACACACACACACACACACACACACACACACACACACACACACACCCTGGTATGGAACTCTCCCCCTGCTTCATTCAGACCCCTAGGTCACATGCTCCTATCCCCTAGCACTTACCCATAGACTGCCAAAACCTTGATTCTGCTGAAAGGCCTTCAACACCTCACTGTGATGCCAGCCATTTTGTGTCCCTTTAACCTTCAGATGGAGGTGACGCAGAGCCAGGTACCCTCACCTGGAACATGATGGCCTGTGAGTGGCAACTCAGTCTGTCCATTGGTTGCTTGACCCATGGTCAGTGACCAGAGGCCTATAGCCTCTTTCTGATAATAGCTTCCTCTAAGTCTAGTCTTGCTAACCAGCAAGAAACACTTGTTGGTTCTGGCAGAGCTTCTGGCAGGTGAAGAGGGGTCAAATCAAGGAGGCTGCGTAGGGGGTGAGTTCTTCTACCTTCTGGATTCTTCTGGGACAGCTCAGATCTTGCATCCAAGTGATATCTGCATCTTGAGTACCGTATCCCCAAGCTCACCCAGAAGTCACCTCATTGTCCCATCTCTGTGTACATACAGAGCAGTTTCCCATGACTTCCAGCAGGAGTGGGGGTGGGTGTTCCATGGAGATGACCCTATTTCCCTCATTCTCTCCTTGTTGCCTTCAG
Seq C2 exon
TGGCTGAACCAGAGCCATAATGCCTGTGTCAACTATGCAAACCGCAATGCTACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000037871:ENSRNOT00000057537:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.105
Domain overlap (PFAM):
C1:
PF0382012=Mtc=FE(11.3=100)
A:
NA
C2:
PF0382012=Mtc=FE(12.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]