MmuINT0142663 @ mm9
Intron Retention
Gene
ENSMUSG00000033720 | Sfxn5
Description
sideroflexin 5 [Source:MGI Symbol;Acc:MGI:2137681]
Coordinates
chr6:85219092-85219957:-
Coord C1 exon
chr6:85219904-85219957
Coord A exon
chr6:85219149-85219903
Coord C2 exon
chr6:85219092-85219148
Length
755 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TCTCTCCTTGTTGCCCTCAGTGG
3' ss Score
9.26
Exon sequences
Seq C1 exon
GTGGTGGGACTTCTCTTGCCTAACCAGACGCTGGCATCCACTGTCTTCTGGCAG
Seq A exon
GTAAGAGTCTGTGCAGAGGGCTCCTGAAAGAATGGATGTGTGTGTGTGTATGTGTGTGTGTGTGCACATGTGCATGCGTTCATGCACACCACACACACACACACACACACACACACACAGGCATGAAACTCCCCCCCCCCGCCCCCCATTGCTTCCTGCTTCATCCAGGCCCCTGGGTCAAGTGCTCCTATCTCCTAGCACTTACCCATAAACTACCAAAACCTTGATTCTGCCGAAAGGCCTCAAACACCTCAGTGTGATGCCAGCCATTCCATGTCCCTTTAACCTTCAGATGGAGGTGAGGAGGGAGCCAGATCTGGAACATGATGGCTGTGAGTGGCAATTCATTCTGTTCGTTGGTTGCTTGACCCATGGTCAGTGACTAGAGGCCTATAGCCTCTTTCTGATACCAGCTTACCCCAAATCTGGTCTTGCTAACCCAAAAGAAACACCTGATGGTTCTGACAGAGCTTCTGTCAGGTAAAGAGGGGTCAAATTGAGGAGGCTGTGTAGGAGATGAACTCTTCTACCTTCTGGATTCCTCTGGGACAGTTCTCATATTCAGACCTTGCAGCCAAGTGGTATCAGCATCTTGGATACTGTATCCCCCACCCCCAGCTCACCCAGAAGTCACCTCAGGGTCCCCATCTCTGTATACATATAGAGCAGTTTCCCATGACTTTGGGCAGGAGTGGAGATGGGGTCTTCCATGGAGGTGACCCGGCTTACCTCACTTCTCTCCTTGTTGCCCTCAG
Seq C2 exon
TGGCTGAACCAGAGCCATAATGCCTGTGTCAACTATGCAAACCGCAATGCTACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033720-Sfxn5:NM_178639:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.088
Domain overlap (PFAM):
C1:
PF0382012=Mtc=FE(5.5=100)
A:
NA
C2:
PF0382012=Mtc=FE(5.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: