GgaINT0081283 @ galGal4
Intron Retention
Gene
ENSGALG00000013635 | SCAF8
Description
SR-related CTD-associated factor 8 [Source:HGNC Symbol;Acc:HGNC:20959]
Coordinates
chr3:49604475-49605415:+
Coord C1 exon
chr3:49604475-49604504
Coord A exon
chr3:49604505-49605331
Coord C2 exon
chr3:49605332-49605415
Length
827 bp
Sequences
Splice sites
5' ss Seq
GAGCTATGA
5' ss Score
0.28
3' ss Seq
GTTGTTGTTTTGTTCTGCAGTTG
3' ss Score
8.05
Exon sequences
Seq C1 exon
TTGCTTCCAATTACCACCTATCAGTCAGAG
Seq A exon
CTATGAAGTTAGTTCCTGTACAGTTCTCAGTATGTAGCAAATTTCTGGTGAATAAGTGTCATACTGAGTTGCTTCTGGCAGTAGATGTACAAGTGAAAAAGAATAAGGTTATTTTTATTACTACATCTTTGGAAAAAAAATATTGCAAAACACCTTTTGTACTTTGTCTGTTTTGGTGTTTAGATATGAAATTACAAAGCTGTTTTAAAATTGAGAACCCAGATGGAATTTGCTTAAATGTTTTTAATAATAAGTATGTTTATTTATTTGAGTTAAGACAGTGAATGGGTCTATTGGTTTTCCAAATCTGCCGTGTTAAGTGGCAAAAATACTACATATTCATTCTCACTGGACTGAAAGGTTTTGTTTTATGGAAAAAAAAAACAAGATTCAGCGGGCAAGTGATGATGCACATAATAAGTACTTGGTTAAGTATCTGTAGGTTTTCATGAGGGTCATCAAGTGTACTGTTATTCTTTGCCCTAGAAAGGAAAACATAATGGGAGCTATCACATTTGGATACTGTATATGTTTCCTTTGTAACTTCACCTATGGATGTCTGCTGTATTTAATGCTAATAAAACTAGATATGCGTTGGCCATTGCAAGGAGGAACCTGCTGTCTTTTAAGCATTTTGGTTGTTAGATAATATTTCATAGGACCTTTTTATTTTTTCTTAAATGAGGATTTCTTTTCTGATCTGATATATATGTAAAATTAGATGAATATAAGAAGTGATATTTCTTTATGTAAAGATACTGTGTTTTTATACTTTTTACACTTGCAGAATGTATTTCTGATTACTTTGTTGTTGTTTTGTTCTGCAG
Seq C2 exon
TTGTACTCGCTGAATGATTATAAGCCACCCATTTCTAAAGCTAAAATGACACAGATCACCAAGGCAGCAATCAAGGCTATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013635:ENSGALT00000022182:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]