GgaINT0083302 @ galGal3
Intron Retention
Gene
ENSGALG00000009069 | CAPN14
Description
NA
Coordinates
chr3:7652123-7652976:+
Coord C1 exon
chr3:7652123-7652241
Coord A exon
chr3:7652242-7652839
Coord C2 exon
chr3:7652840-7652976
Length
598 bp
Sequences
Splice sites
5' ss Seq
CGGGTATGT
5' ss Score
8.79
3' ss Seq
TCATTCCTTTCCCCTGACAGTTC
3' ss Score
10.93
Exon sequences
Seq C1 exon
GGAACTGCTGGTTCCTGGCGGCTCTGCAAGCCCTGACATTCCACCAGGACATCTTAGCTGCAGTCGTGCCACAAAACCAGAGCTTTGAGAGGAAATATGCTGGCATTTTCCACTTCCGG
Seq A exon
GTATGTTGGCTCCACTGGAGCGAGGGAGGTCTTCAGAAATCCCCTGTCATGTTTTATGTCAAATCCTTGGATAATTTCTACAAGGTTTCCCTTGGCCAAGGGCAAGCGGCCAGGGGGTATCCTGGCCTGGAGGGCAGCCCATCACTACTTCCACAAAACAATGCAGGAAGGGGGTTAACCAGTCTGAGGATATGCCTCAGTTTGTCCCTTCTCCCAGGCTGAGCCCTATCCAATATTTTAATCAAGACAGATGTCTTAACATAGCAGCAGCAGTCATAAAGGCCCTGACTTTTTAGTCAGCTCTTGCTGCAGCTCTGCCACCCTGCAACTGGGAGCGCCTTCCCCGAAAGCTCAACTGTTCCTCATTTGCCTATTTAATCCCTCTTTTACACCTCACACACACTTTATTTTCTCCTTTGTCTGGGTAAGGCTGATGAGTTGAATCTTTGGGTGAGTCAGCACCTTCCACTGATCTAGTACAGTCCCTAACCCAAGGCAGCTAGTACTGAGCCCACGGCTAAGCAATCCTGCATTTGCCCTTGTTTCGAAGGGAGGTTCCTTCTGATGGAAGTATCAGTTCATTCCTTTCCCCTGACAG
Seq C2 exon
TTCTGGCACTTTGGTGAATGGGTTGACGTGGTGGTTGATGATCGCCTGCCGGTGAATGAGGCGGGGGAGCTGGTCTTTGTTTCTTCAGTCTATAAGAATGTGTTCTGGGGAGCCCTTTTGGAGAAGGCATATGCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009069:ENSGALT00000014761:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(13.0=100)
A:
NA
C2:
PF0064816=Peptidase_C2=FE(15.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTGCTGGTTCCTGGCG
R:
TAGCATATGCCTTCTCCAAAAGGG
Band lengths:
254-852
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]