GgaINT0087009 @ galGal3
Intron Retention
Gene
ENSGALG00000011136 | CAPN9
Description
NA
Coordinates
chr3:42373935-42378101:+
Coord C1 exon
chr3:42373935-42374012
Coord A exon
chr3:42374013-42377940
Coord C2 exon
chr3:42377941-42378101
Length
3928 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
3' ss Seq
TTCCCATGTCTTCCACTCAGGAT
3' ss Score
9.17
Exon sequences
Seq C1 exon
CTCTCTAGAGTGGCGTTTGGTCAGCCCATCGGAGCAGAAGCGCTTGGCTCAGACAGCACTGGATGATGGAGAATTCTG
Seq A exon
GTAAGCCACAGGGTTCGAGTGTGACTCCAGTCGGAAACCAAGGCACAAATGATCAAAATAAGTGACAAGGAAGAAACTTGAGTGATCAAATGCTCAGTTTCCTCCTAGTAGAGAGCAGGTACTGCGTGTTTCATGTGAGCACATGTGTATTTTATTAACAAAAAGCATTTTAAGTATCAGTTTAGTTAACGATATTAGCATATTTCAAATACTATGTGTCTCCCATGGCTGTAATACCCTTTAAATCCTTAACAGGAACACAAGCACACAAGGGAGCATTGTATTGTACTGTATTAGCTATGAAATGCCTTCAGGGTTGATGTTAGTCATACACTGGTAGGGAAGGGAGCGCTTAGAAGCAATGCTACTTGTTACAGAAAGTACAAGAACTCCAGAATATGTGTGAAATGATGGAAAGATTTAAGAAAAGATGAAAGGAAGGGGGGGGGGGGAATGTGGTAGCAATTGCTTTAGAAGTGTGAAGTATTCTTCATGCCAAATTCACTATCTCAGGCAGAGCAGATGGCTGATTTGCACAAGATTCCCTCTCCCACCCTACCCCATGTCAGCCATGCCATGCTCTACTGACAGTGTGTCTGGTCATATTTTCTGGGGCCAGATGCATATCTCTTCTACATAGAGATAAATCTAGAGAGGTATTCAGCAGCACTATTCCAAATCTTTCCCACAAGTTAACTTCAGGCCCGAAAAGTGGTATAATACAGATGATGAAGAACATTTAGTCACATGAAATGATTTATCCTATACTTTGATAGCTCCTGAAGGAAGGAAGACCAGTGACTGATCCATTACTTAAGCATCTTTACATATGATCTTTATTAGTTATTTTGCGACTCAGAGCTAAGTACGTCCTCAGAAGGTCAGTAAAATGAATGGGGTTCAACACACCCAGGCAAATATTGGTCTTCTTCATGCAGTATCTCAGACACTGAGAGCAAAAACAGAAGCCACTGGGACTAAAATTTTCCATTAAGGGGTTAAGTGGACAAAAATTGTATGGAAAATATAATGAATTCTTCCAAAACCAGCCAGGCAAGTTTGAGACTAGTTAAACTTTTCACCTAGTCCATCAGACTTATTTGTCCTGATGCTTTCTGACTTTTGCATATTTCTCTAAGGAGTGTTTGTCTGTTTGCCCTTTCTAAGACACACCTTGATGGTTTCCCCATCAGGATAAGTATACAGACTTTGCATGATCAGTGATTGTGGTATACTCCTAAAGACACTGAAGTGGTCAAACAAGGAACAAGATGAACAGAGCTGCTTCTCCCCTGCTTTCAGTTTGCTCCTACTGCTGTCGCAGTTTAGATGAGGAGATGGAGCTTTATTATCACTTCTGTAGCTGGGGACCTTCAGCCAGCCTGTTCACCAGGACTTCTGGTGGTGACTTGGCCTACCTCCCTGGAAAGCTGGAGTGATCTTTGTGAGGTGTTTTTAAACCTGCTGCTAGAAACAGTGAGTAGCAAAGTAATTCAAGTGTTCAAAACATGTTCTCCGTGACACGCACTATTGTTGTGCTGAGCAAATAACATTAGGTGCACTGGCACTTTTCTTGTTGGTGACAACCATTTTCTACTGAAGAAGACCTAATGTCGGAGAGCTCAACAAGTATTCTCTTTGTATGTCATTTCTTAATGTGTCTGCAAAGTGACAAGGAAGCCCAAGAAACCTACTGTGCATTTCTGAACAACTTCTGTAATTGTGCTCCAGGTTTTGGACCCATCTTATTTCATGTGCTGATTGCACACAAAGCAATGGTCATTTCTCGTGCACAGACTCATTTTTGTTAAAATGAAACAGGAGAAACAGAAGAGGAACTACTCCTGTTTATTCTCATGTATTGTGTTTGGTTTCATGCTAGGTAGAACAGGAAGGTTAGGAAGGGAAAACTGACCAAAAGCTACAGGACATTTAAAGGAAGATAAGTGATGTTACGTCGCAGTGGCTTCACTCAGTGTAAAAAGGCAGCACAGTTGTGAAGTAGTACACAGGATAAGGCAGCCAAGGCGAGCAAAGTCATCTCCTAAGTCCTTTTGAACTTTCTGTTCTTTGGGCTGAAGAAAATCTTTATGGTAACGTGCTCAGGGCCTGCTTACCTCATTAACTGTCCCAAAGATATGTTGTCAGTGTTTTAGCAGTAAAGATCTGTCTTGTCAGGGCAGTTGAAATGATGCTTCTATCAGATAGGAAAGAGAGATCCTACTGTTCACTAAGAAATCAGCTTCTAACTTGCCCTAGTCTCTTCCCTTCTAAAATCAGAGGGTTGGAGTCTTCTCTTGCCTTCACCAGTGGAAATCTAGGACAGCCCTACAGAAGTCAAAACAGATGTTTTATCTTCTAGAAGCCAAATCTGATCCAAAAAGTGCAATTTATTCATCTACTTTGCAGCATGCTTCCAAAGAGCCCCAGATTGCCTTGAATGGCCAGGAAATCAGAGGCAGAGATTTTGCTACACTGCTCTTGCTATAGTGTACTGAGCACCATAATGAGAATTAACAGAGTCTGTGGCATGCAAGGCTAGCAATATATGAGAACAGCTGACAAAAAAGAGGAAAAGTCCCAGGAATGCAAGTTCTACTGTTTCATCCCTCACTGAAAAAAAATGTTGTAAAATGGCCCATAGCAGGTGTAAATTATTGACACCATAGACACCCATTTCTTATATAGCAGAAAAATGGAACATGCTCTGTCCAGTGAGCTGCACTCATTGCTAGCTGGGTCCTATCTGCCACCAGCACAGATATACATGTGGTCTTGAAGAGCTTTTATTTTCCTTCTATTCCATTTTTGCTGTCATGTATTAGTCATGGGAGAAAAAGGATAGCTACAGGAATTTGCGTCAGGAGGGAGCAGTTCCTCTGCTAAATCCCTTTGCCCAGGGCTGCACACTATGCACAGCTGGGTGCCTGCCTCCAGCTGTCCTTTTTCCTGGCTATTTGCTCAGCCCTGAATACCCAGCTCCCCAGCCAGAAAGTTTGTCATTTCTTTTCCAATTTACTTGCTAGCTAAAATCCCATGAATTGTCTGCTTCTTAGCATGCTGAGTAGGCTAGGTTCAACCAATCCAACATAGAAACTCAAAAATGACTGTATTTTGGCATTAACTTTTCCCTTTCAGTGATCATGTGTATGTATCCACCTTGGGTTTAAAATACATGTACTGCAATCTGTATGGTGCTCCAGCAGTGTCTGTATCACCTTCAAGGGCTGGAGGGCTGGCTGGTGTCTTTACTGAAGTCCAATTATACTTTTTATCCCTCTGCTTGGTGCCTGTTTTTGCTAAGACGAAGTCCCAGGCATCCATAATGGAGGAAAGGGTGAGAAAAGAACCTTACCAGAAGCCCAAACGTTATTTTAACTGCAACGTGGACAGGCTAGCTGTACCACAGCCTGGCTAATCCACCACAGTGTGTCACTTGTAGTGCTGCCGTGTGGCTGCTGTTGAATGCACAGATGATCTGTAGGCAAACTTGGCTCCTGTGTGGATGCCTGCCATCCTTTGGCTGGTTCTCTGCCAGTGTGAATGCAACTCGGGATTAGGATCTGGAAGTCCAGGGGAAAGAGTTGGTTAAGTATTTCTTTCCACAGTAGGTTTTATGCCAGCGTCTCTTCTCTGTATCTTACACTCAACTGTAAATGAATAAAAGTTGTGGAGTAACAGTGAGAAAAGAAAGGGATAAGAGATGTCAAAATCAGGCTATGACAGTAGGGTTGTTTGTGTTTCACACCACGATGAATGAGAACTGTTCTTCCTCTTTGGGCATCCAGCTTATCTCCACAGTCACTGGAGCTATTCAAATCCATGTGAGCTGATAGTCTGGCCTTGGGACCCTGGTGTATAAGTGCTTTTCTGGGCATCCTTCACCAAAGTGAATACTTGTCCGTTAATTCCCATGTCTTCCACTCAG
Seq C2 exon
GATGAAATTTGAAGATTTCAAAGTGCATTTTGATAAGGTTGAGATCTGCAACCTGACTCCAGATTCCCTGGAAGACAACACTACCCAAAAGTGGGAGGTGACCATCCATGAGGGGAGCTGGGTCCGGGGATCCACTGCAGGAGGATGCAGAAATTTTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011136:ENSGALT00000018152:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.018
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(8.8=100)
A:
NA
C2:
PF0064816=Peptidase_C2=PD(6.4=34.5),PF0106717=Calpain_III=PU(16.3=43.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]