GgaINT0094889 @ galGal3
Intron Retention
Description
NA
Coordinates
chr2:79787227-79791392:+
Coord C1 exon
chr2:79787227-79787399
Coord A exon
chr2:79787400-79791060
Coord C2 exon
chr2:79791061-79791392
Length
3661 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
GATGGTATCTTCCTGGTTAGGTC
3' ss Score
6.87
Exon sequences
Seq C1 exon
GGCCCAGCCTCCTTTCGCAGAGTGCTCTGCAGCTCAATGCCAAGCCTGAAGGCTCCTTCCAGTACTCGGCCAGCTACCACAGCAACCAGACCCTTGCCCTGGGCGAGACGGCAGCCGCCCCACTCCCGGCCCGCAGCACTCAACCCAGAGGTGCCGTCCAGAGCTACAGCCAG
Seq A exon
GTAGGTGCCCTTCTCTGCTTTGCACTGTCCCAAAACTACACCCAAAATCATGCAGGGGAACACTTAGGAAGGAGAACTGCTTGCCTTCCAATGCTTGCCTTTTTGTCTTGCTTGAGGCATCTTGCAGGAGGTTGAATTACCACTGTCATTTTCACATATCTAAAGTGGCTTGATTTTCAGGGTAACAAAATAATCCTGATGAGAAAGGAGATTTACATGCTGGTTTTACTTGCTTGCTTGTATATTTGGTGGTATAATGTTTAGTCATTTAACTATGAAATTCTGTGCTGCTGAGGAGTCCCAGATAAGGTCTAGGACCTTGCCATGTTGGTATCAGTTAATTACAGAAAGCACTTTCATGCCAGAGGAAAAAAACAAAGCCAGGCTTATGCTAGATGCAAAGTCTGCTTGGGACACAATTTAGAGCTTGGTGCTGTCATTCAATCCCATGTGTAAGAATCACTTTTTGCTTCTTTTTCTCTGAATTTTAAGATGAACCACTTATTAAACAGCCACATGTACATTTCAAACTTTATAAAATTTGTTTCAGATACTCATGAAAAGTCTGAGTGATTCTCTCCATTTCTGCCACATAACCCTCTCTCATCTTCTGTGCTTTTCAGCATGACATTAAAGCCTCTCACTGGGAAGTTAAGCTTTAGGTTAGACCAAAATTTCTCAAAGTATTCATGCTTCTGTACATAAGCAAAGTCAGACTGGATGTTGTCAGCACAGGTTATTTTCTCTTTTTAGAACTTATCTGCCATGGTAAAGCAGACCATTTCAGTGTGACACTGGGACATTTTATAATTCAAGATTCAGTGGAAGTGAGCTGCATTTGAATTTCAAAGCCTTAAATTGCTAAGAGATTTCAAGTATTATATAGCCATCACACAGCTTGTGGGATACCAAGAGACATACAGTATTCCATTCACCCAATTTGCTCAGAAAAGTCCTCTTTCCTCTAAGACCGAAAAATTAAATAAAGCACAATTAAATTTTATTTCAAATTGGGTATGTACTTCTATCAAGGGTTTAAAATGTGCTTGTGTAGTGGCCAGGTCTCGGGGCTTTTCTGTGTTTACCAGAGACCTCCTTCCCTTATGCTGTTAGGGATTGGAGCCAGCAAAGGAGAGCAGGACTCCAGTTGGAAAGAAGGGTGGCAGCTGTAATACTCAGTAGTAGCCTGGGCAGATGTCATTAGGAGTTGTGCTTTGTGAAAAGCATCACACCCACGGTTAGCCTGAAAGGGTGGGATTCATTCTGCAAGGAAGCTGAAAAAAGAAGTAAGATGATATAAAAGGAACAGGTTGTAAGATCAACAGAAACAAAATAAAAAAGAAGAGAGTGGAAGGAGAAAGAATCTAAAAAACAAAAATAAAAAGTAATGAAAGGAGGAAGGAAGAGAAAGTGTAAATGTACAATTGCTCAGGGTTTCAGAATAGTGATATTCTTAATATACATTTCCTCATCATGATAAAAAAGGATGAATTTACAAAGAGAGAAAAAATCAGTGATCAACATTTCTGTCATTTAAATTACGTTGAACTGCCATTGCTTAGTTCTGAAAAATGCATTAATCACTTAATTCATATGGAACTGGTTAATCATTTAATTCATATGGAACTAAGTTACTAAAGTAACCTTTTCTATTTTATTTTCCTTGGTTTGAGAGGGCAGAAGACAGGGTTTCTTTCTGTATTTCTCCAGATTTTCTGGTAGATGTTCCAGCAGAGAAATAACTCATGGAAAATACGAATAATAGTGTGTATCAATATATTTCAAAAGATGCTTGGCAGCTTCACTTAAATTAAAACATATCTTCAAAATGTTAACAGCCATATGAACTATGAATTAATGTCATTAAAAAAAAAAAAAAGGATACAAAGTATTTTTAGAGTTAAGCAAGAAGACAAAGATTCGGTTAAAAAACTGAATACAACCACTGCTGATCCCACAACTAAGGGGAAAAGAAGTCAGTCCTTGGAATTGGTTTGCTATATCCCTATTATAATTAAAATAAGCCTCAGGAGTCATAATTGTTCAGATCATGATAATTTCCTTTGTTGTTTGCTTGCAAGGAATATAGCTATCTGAACATGAATGATAGCCCAAATGTGTGGGAAAATATGTAAATAGTCCCAAGGCCAGCTGTGACAGCAGGAACAATTTCTGAAAATGCAATTGTATAAAAAACAGGAACTAATTAGTCTTGGGATTTCCTGTATAGAGCTGCAAAGTACAATGTAACATTTTTGTCAGTTTGGAGGAGTATGTCATAGATCATAGAGTTTTTCTACTGTTTTCAATACTTTAGAACACCAAACTTCTATCTTCTAAATGCTACAAGAATAGAATTTTTTAGCAACTGCTCCTCAAAGAGGAAATTATTCTGTTTCCCAGCTGAAAACAGCTTCTTAAACTTGGAGTCCATATCCTGATACACCCTATATTAATCAATTAATGGTATTTGCAAATAGTCTGTAATGGGTTTTGTGACAAAAAGTAGATTTTGCAGATGAGTGAGTGAACACTTTTTGGACAATACGTAGCTTGTGAACAAATAATTGGGTTTACTGTCATCTTGAGAATGGTCAACTTACCTTGTAGATATTACAGGAACATAAAACACATGGAGTGCAAACAGTGGTTTTCAGCTTGTTCTACCATGTACTTGCAAGGGGAAGGGAAAGGAAGTGGAACAAATTAACATTTCTGGGTGAAGATTTTTTTTTTTCTAGCTTCTGCTGATCACGTGTTCTTCTCAGAGGTCAAGGCAGCAGGCAAGGTTAATCACTATTGTCTTATTATCCCATGCTCCTAAAGCACCTGGACGTGCTGGCACAGAATTTGAAAACCATTAAAAAAAAAAAAAAAAACCTTGAAACAGTTAATTTTTTAACTTGTCTCCATTTTCTTCCGACCAAGTCATAAGTTAGTTATTCAACAGACCACTGCTTCTCACTAGTCTTATTTAGAATGTAGGCAAAATAGCACCAGAATGTATTTACTTCTCAAGTAAAGACTGTATGCTGGCCATTCTCAGTTAGAAGATGTTTATTCCTGCTATGAGTCAGGTGATGAGCAGCCTGAAACTCTGTCCAGGCAAAATCTGAAAGAAGGACTTCACTTCTGGTAGGGTGTGGCAGATGATGAGGGGCTTAAAATTGGGTTCCAAACATGACCACAAGAAGTAAAGGAAGCAGATGAAATCTTAGGACAGATTACTCTTACTACAAACATTCACAGAGAACAATTCACTAGAATAGTTTGTTAATGAAAAAAAAGACCTGCATCATGGTGGTTTGATCCTACAGTAGTTAATGAATGCATCCAGTAATGCTACTTTAAAACCAGAGCTTGGCCATCTCTAGACAGCCTAAAGGATCTCACAAATTCTGTTTCTTGATGTAAAGACTGTGATGGTATTAGCCAAGTTCATCTAACCGCTGTGATTAGGATCAGGTAGGCTGACACGTTTTCCTCATGGTGTTGGAGTATGCTTTGAAGTACTGTATAGAGATGACCTTGCATTGTTCATGACCTTTGTGGTGAAATTGGGAGAAAAATAAAATAGGCCGCAGTTAAAGGATTCACAGGTACAGTCAGCATCTGTTATCGTAGAAGTGCATCTGAACATAGATGGTATCTTCCTGGTTAG
Seq C2 exon
GTCAGGAACTTACAAATGACAGCAAAGCAGTCCTGCAGAAGAAAGATCCACCCACGGGTACTGCCCAAGGACTGAAGTCCATATCACGAAGACTGGGGAATGTTAAGTATTTGCCATGTCTTCTGCCCTTTGCAGAAGAGTGCTGATGGAAGTTTTGGACCAGAAGAGGGTGATACCTTGAGTGAAGCCATATGGGGGGGTTCTTTGAGCTGACGACAAACAAACAAACCAAAAGGGAATCTCAATAAACTGAGGAAGCCTTGCAGTCACTGAATGAGCACAGAACATCATGTGGATTATATAAGAGAGCTGGACACTTAAGAGACCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014502:ENSGALT00000023413:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.603 A=NA C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]