MmuINT0043578 @ mm10
Intron Retention
Gene
ENSMUSG00000022240 | Ctnnd2
Description
catenin (cadherin associated protein), delta 2 [Source:MGI Symbol;Acc:MGI:1195966]
Coordinates
chr15:30634644-30647324:+
Coord C1 exon
chr15:30634644-30634816
Coord A exon
chr15:30634817-30646768
Coord C2 exon
chr15:30646769-30647324
Length
11952 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TGCTCTCCCTCCCGGCACAGGGC
3' ss Score
8.87
Exon sequences
Seq C1 exon
GGCCTAGCCTGCTCTCCCAGAGTGCACTTCAGCTCAATTCTAAACCTGAAGGGTCTTTCCAGTATCCGGCCAGCTACCATAGCAACCAGACCCTGGCCCTGGGTGACACAGCCCCTTCTCAGCTCCCAGCACGCAGCACGCAAGCCCGAGCTGCCGGCCAGAGCTTCAGCCAG
Seq A exon
GTAAGGGTCCTTGCTCTTTGTGTGGATGCAGAATCAGAGAGGCACAGGGAACATGGGATCCAGATGGTTTTTGTGGGAGTGTTGTACAACTTACAAAAGGTCCTCGGCTGTGTATGAAGGAAAGAAATGGCAAAATATGAGTGGAGAGTAATACAAAATGGGAAACATTTTTTAAAGTATTCCTGCGAGTTGAAAATCTTGTATCTCTGTTGTGTGTATTTAGCTGTATGAATAAGTAAATGGGCATATAGTTACCATATCTACATCTATCTGTGTTATTAGTAGACCAGACATTCTGAATTTTTTAGTTCACCTGGTGAAAAGAAAATAGTTTAAAAGGAATGTCATGCAATTATTCTCTGAAGTTAATCTTATCAAGGAATTGTGTAAACTCTTAATCACAAGTATAGAATTAGACTATAGATAATTGTATTAAGTTTAGGAATAGTTACACTTTGTCAAGTCAGATTTTGAAGGAGAGCCTTAATTTTTTGTTTTCTTTAAGGCATGAGAGTGTTTTTTAAATTCAGTGAACAAATTCATTATCCGTCCTTAAAAACAACTCAGTTAGAAGCAACCAGGTCGAATGCATGGGGGTGTTAATTCACAGAGAGGGCACATACACACACACACACACACACACACACACACACACACACACACACGCACACACACACACGCAAATGTACACACACACAGAGATGCACACACACACATTCACCTTTGAAAACTTTTATGCCACCTAAATGAAAATCGTGTGTGTGTGTAACATTTTTGTTTTATGACTTGGCTGTAGTATGTAGTATATATTCAATCAATCCACCAGAATTAATATATTCAAGGGATATGTTCTTTAATGAAACTTTGGGCATATTTCCAGCTGTATAAGATATTCTGAACTACTGTGCTTTTGACTCTGGAATGAAGGTCCAACCACTCCCATCTTTGAAATGAGGAGACTGTTTATTTCTTTAGGCACTTATTGAGTAGCACATTTACCAGGAACCCTTCCCAAGTCCCAGGACCCATCACTGAGTTCTGTAGGCCGCTAGCCCATCTCGTTTACTGATTTCCTGAGAGCTGCTTGAAAGCAGGCTCTCCTCTATGTAGTGGTAGGACCTTGTAGGCCATGTGTACCTAGATAATGTGGGCAGAGAGATTTAGATTAGAACGGTCTGGTGTAACCACTGCAGCAATCAAGTGACGCTGAGCATTTCGTTTCCTAAAGTCACACCATCCTGATCACTGTATTTAAAAACGACTTCTTCCCTCAAGTCTTGCCAGCTCTGGCTTTGTAAATGTTACCTTCTAGTGAGCCAGGCTGTAACAGCGCAGATAAAAGAGAATTGTGAAGCAGTTCATGGACTTGAACGCTTGGCTCTCTGCCTCCCATGAACGCTCCATCAGAGATTGTTATTACATTGTAAAGATGGCGCAGTTATGTTTTTTGGAATTACCAGAGCTGTGGTATGAAGACACCAATGGAGTGTGAGCACTCAAGAGATAACTTTAGCAGGAGTTAAATATTGTGGAGTAGAGAGGTAGGATCAAGATGTCTGAAGACTCACACCGGGCTCTGATGGACTAATGCACTTTCTCCAGCAGAGCTGAGATAGGAGTTGACCACCTCAACTCAGAACAGTTCAGTGGTTGTTGTGACTGGAAACATGGCAAACTCCAGCTGTGTGTTGTATATGGAGAGCTGATTCACTGAATACCACCATAGGACCTGTAACTTCAAAGTAATAGCATAGAAATGCTCGAACCAGAAAACTAGCAATTAAGCCAAACAATTAATGTTATACCTTTGAAAATCAAGCATCCAGGTCCCGTTTCAGTGGCATCTCATTCAGATCCATTGGATTTACAAAACCCATGTGAAATATTCTTGCCAATATCCTAAATCGTATAACATTTCCCCAGGAGAGATTAATGTTGTGGATGGCCTGTTGTCATCAACTTCTACATGGGCTACGTGCTACATAGTAAGCCCAAGTTGTGGTTAATGGATGATAAGCTGAGTAAGACCAATGACTAGCTGAAAAATATTTATTCTTTCTCTCTAAGGATTGTAATTCTAAAGGGATATCAGTGGTTTCTGTCTAGTTCACAAATCACATCCCTGTGGGAAGAATATGAAGTAGCATCATAAATGTCTAAGATGCTGGTTTCCATTCTTAGACAGACTCTAGTTTACTCAGCACCCTGGGGCTTTGCTGAGTGACCGTTACCAAATTCTCCAGGAGGCCTTGGGGATGGACTGGAAACCTCAATGTATCCATTTTAAAGTCTCATCAGCCACAGACACTGCTGTCAGACAGTTCTCTTGTGTCTTTGGCTACTCTTTCCTCAAACGCTAAGGTGGTTCATGAAGTAGAAGTGAAGGACAGAAGATAAACAGACGGGCCCTTTTTCAGGATGCAGTGTAACCTGATTCACATGGCGCTCTCTCTTCTCCACCACAAAGGCTCTGCCCATCCAAGCTGAACACTTCTCATAGCTTTTAAGAAGGCTGTGGCTTACTTCTCCCTGTCTACTCACTTTTCAGCCAACTTTGGCCTTTCAGTTGGCTCCTCTAAGCACTCCCAATAGAATTGCACTTTTCCCCCATGTACTTAATCTATTACCCGATTATTCATTGATTCTTCAAGGCATTTAACTGTGCCTGGAGGTGTAGTGAGCCTGTATCTTTAGGATGATGAAGTATGGAAAATGGACATGGTCCTTGTCCTCAGGGAGATTTTATTCTAGCAGTGGGCATGAAAATTAGAAAACCAACACTTGAAATAAGCAAAGTGCATAGACTATATTCATAACATATTAGATTGTGTTACTTAATACAATAATGATTATGCTATGTAGATAGATTATGACATATAATATGTTCATAATATATTACATTTATAATATATTAAAGATGATGGCCACTGAGGGAAGGATATGGACAGAGAATAGGATGATATTCAGAGAAGAAAATAAAACACCATGGAACATTTTAAAGGAGATGTTTGGGTAAGGACACATGGGAGAGGCTCTTGGCTATCTGTGGAGTGGTGAGCCTAATGGTCTCCAGCCGCAGTTAACTGGCATATTAACAAAACAACATGTAGGTCAGGGCAGTCAGAGCAGGGTTCGGGGATTTGCAAAGTGTCTGGAGCCTTAGTGGATCAGTGGTAGGACTCACTTTTGAATGCAGTGAGAAGTAGAGAGTCCCAAGCAGAGCCTGACGATACATTGAATCATTGTCCTGCCAGATACTGTTGCACAAAAGGCTCCCCTTAGTTTGATTCAATGCAAAGCTTCACCTCCAGAAAATCATTTCTACCCCTGCAGTACTCGGTCCAGGATCCACCAAATTTTACCCGGCTCTCTGAGGAAAGGACCTGCAGGAAACTGAGAATCGTATGACATTCATATGAGGTTAAGCCGCACAATAGTGGACATCCCAAAAGTTTTTCTACAGAAGAAATTCTTCATTTCCTTTCAATCTGGCCTATCTGTTTAATGTTATACTGACTTCATGTCTTAAAAGTCCCCGTGCAAGCTATATCATAATTATGAATATGTTGATGTTCCTGTCTCCCAAAGGCAGAAGAGTAGATCATCGGACCATTGACACTTGGATGGCTATTTTATGAGTGGTAGTAAGGTAGACCATAAACTCGCCTATAGTACAGAGGGAAAGAAAGTTCCTAATAGTCAGCCATTGTATTGATCTCCGCATGGGGAAGGCCACTCTCGCTTGCTTAATTATAAAATAAATTGCCTTGAAGTAATACTGGTACTGTAATTGAGATAGCAAAATTGCGGGTAACATCTCACTGACAAGATCAACTTTACTGAAAAAAAGGTATGGTAATCGCACAGATTTCCATAGCATACTTTAGTCCTTCCTAGAAACATCTGAGTAGCTTTAAAAAAAGTGTCTGAGTTCCAGTACCACTGTTCCAGGGTGTGTCCACAGATATGTAATAGTGGTACATTTAGAAAACACAGCTTTGCATAGATGTAGATGCCGTGTAGACTCCACAGAATGCACCCAGCATGGGCATTCAGGGGAGAGGGCATGTTGTTTTACGTGTTTTCCTTGGCATACCTGTGGGGTTCTGGCAAGTGTTTTTCCCCCCTCTCTCTCTTTTCCAGATAGTTTTAAAATGCTTGCTTCTTGTAAATCTGCATTCCTCCTAGCTTTGCTTTCAAGTCTTCCCCCATTTTCTCTCTCTAGCATAAATATGTTGAATCTGGCTTTGACAATCAAAGCGTTTTGTATGGCAAGGAGTTTATATTTGTGCTCCAAGCTTACGTTCCCTTTTCTGTGCAAATATTTAGATTATTAAAGTTGTTCTGACAGAGCTTCATGCCGAAGTGAAAGTTTCATGGATATATATTTTTACCAGTGTTCATGTAGACTTTCAAAAGATCTGCCACCGAGATACCCTTCCTATGTATTATTTATGATAACTGTCTGTAGGACCTTTGTGTCCTTGTATTGTGTTTTCGTCTCCACTTTTCTTTCTATTGGAACTTACAGAAATGGCTCTACATGAAATACTTAATAGAATTTTAATATTGGCATCCCCTGTCTGCATGGCTAGGGGCAGGTGGCTTGTAGGATCTCTCAATATCTACAATATGTGTTCTCCCTCTTCCACACCTTCTTATTGCACCTTCTCCTCTCTCCCCTGTCCTCTTCCTCTTCGTCCTCCTTCTTCTCCTCCCTTCAATACTTTCCATGATTTTGGGACCCTCAGTTAAGGAGGAAGCAATAAGGGTTGCCTCCATGAGGATGCACACCATGATACTTGGCCTTTGGACCCTTTATCTGAGGGGAAAAACCTATATTCATTTTTTTTTCAGTAAAGTTGAAGTTGTCAGTGAGATGTTACCCACAATTTTATTAGCCCTTCCTTTCCCAGTGATGCTCACCACCTTGGCAGTTAATGCCTTCAGGAACAACGCAGGCCCTATGCATAAACACTGTCTCTTCTCTTTATGTTATTTATCAGTTTCCATCAAAGCCAGAGCCCCTCTGGAGGATGGCTAGACAAGCAGCACATCATTTGACTTGACTGTGTCCAAAACTCAAGTCTCTCTTACAGTACCAGGATTTTTGAAGTTGTAGGTTGGCACCCCCTTCTAGAGACCAGTGTAGAGGAAAAGTTGTCTGACTCCTGTGAACCATGACTATAATGCAGAAGCAAATTTGATACAAGACAGAGATTAAACTCAGGGGACATAGCTTATTTGGGGATGTAGATGTGCCCCCCTGGGCTACATTTTATACAAGAATTCAGTGAAACCATTTGGCAAACAAAAAACCTGAAGGGTTGACAATTTCCTCCCGTTTGAAGGCGAGAGTGGACAGCTTTGTCCATACTTGTGTGAACTTCTGAGCTCTACACACACATATCCCAAGAAAGCAGAATCATTTCTCTAAAGTTTCAGTCAGCACAGAACTGATGGCCCTAAATTATCTCACTGGAAGGTTCTCAGTGAGACATCAGTGTCTCTGGAGTGGTCCCTGCAAGGCCTTCCTTCATTCCGGCTTCCCTGAGTCCCTGGAAGAGGACACATCAGTCATTAACTTACTCTCTCTACTTTGTCATTATGTAGACCACACGGTGTTAAGATAGTTTCTGCAAATGCCAGACCTCAGCCTTCCTGATGTAAGCCATGGCCACATTCCTGCACCTCTCTTAACAGCCCAAAGGTGGAAGCTCTGCTTCCTTTGAAACGCGCTCTCTGCCCTTTACTGACCATGACCCTGTCCTGACCCAAAAGCACTTCTGCCAACAGAGTCTGAGTCAGAATGGTCTTCAGCGGGGACACCTCAAGTGACAGATCTACCCCTGTGTTCAAGTAACCACAGGAAACTGAGAAGGGGCAAAACATGGGTAAAAAGGAGTTGCCAGACTGATGGCGATCCACGAAGCTTGCTCATCTTGGGTAGTCACCAGGTAGTGACGTCAGTTGTCCATTCCTGACTTCACGGCATTAGCTCCCTAGCATCCTGAGCAAATGTCATTCCTCTCTCAGAGCTGGGGCCCTGCTGACTGCTTCAGCAAACTTGGCAAGTCTCAATGTGTCCTCACAAGGACTGTCCTAAATCAGGGACCTGTTTTATACAATGTGGTTTCTTTTAGAGCCAGGGTATACTCATGACTGGGACTCAGGATTCCTGAGAGCGTGTTGGCTGTGAGGTCACTTGAGAGCTGGCTGTAAGCATTGGGATTTTTCTGGGGACACTTGCTCTGCTTAGTGACTTGTAGGTGCTAGTGACCTGATACATCAAGCTTGTGCTCTGTGTAGTTAAAACCTGTTTGGGAGCCATGTGTGCATTGCCTGCCTTCCAGATCCAATTGTATTGAAAATATATCCTCTATGAAACAGCTCTATCACAGTGGCATGAATCCACAGTACAATTACATAAAAGGTCACAATAAGCAAATGAGTAACACACACACACACACACACACAAAAGTGGAAAATAAAATGTATAACTATAGTTTATCCTAAGTCTGTCCTAAGCAAAACTTACATACAAAGACATGATATATTTGTTTTATCAAAGCATTTCTGAGTGTATGGTTTCTATTCTTGAGGATTTTCTAACAAGATAAAACAGGGTTACACCGAACGTATCCCCAGCTCCAGCCTGTTGAGTCATATCACATACTCGATAGCTACTTCCTTCTGAGTTCCAAAGAAGCAGATCCTCACCTTCTCAGCAACAAAGGGACATTAGTTCTGGGACTGATCTAAGGAACTAGGAAGGAAGAACACAGGTTCCTGCCAGCAGAACCATGACTAGGGACAGCATCAGGACCACTTTGCTCCAAGTTATTGTGAAATACTTTGTGTCACTATTCTTCTTTAGGGTCCTCTTCAACAATAACACATTTCTTCCCATTCTCTTTACTGATAAATGGTCAAATATCACTATGAAAAGGAGTCTAGCCCTTAATTTTTACCTGAAATCTAATTTGAAAAGTAGACTTACAATTTTATTGTATGAAATTATGTTTGAGGTACAGCTTAACCCGTAGATGAGTGGACTAAGTTCTTTCCATCTACTGTGTGTGTATTTTTTTTTAAGTCAACAATGGGTTAGGATAAGCTATCCTATGAATTGTGAAGTAGACTTAAACTATAGCCTTATGTCTCCCAAACTGGCCAAGAGGCACTAAATGAATTTATACAGTGAAACAAAAGCAAATGTGTGCTCCCAGGTTCCCATTTTTTGTGCAAATGATGAGCTGCTCTTCGACATTTATTACTCCATCAGCCACAGTGATGGACCACAGCATTCCTGGACCATTTGTTATGAGCTATAGATGAGCTGGTGCAGCTGTGCAGCCCAATAAGTTAGACCCTGGTTACGTGTGGCTGTGTGAATTGGGATTAATCATGTGCACGCTAAATCCAGTGCTTCCATTGACAAGCAGCATTTGAGGCCCTCAATGAGCCTGTCTGGCTAGTGAGTGCTAAATTGGGACATGCCAGTTTGGGACATTACCAGGCCTAAAGCAAGTGGATGGGACCATGCTGCTCAATGGGTACCAATAAGGCTTGTGTAGTGAGACTGCTGAGTGATAGGGGTGTTTAAACACACAGAGACAGCAGGCTGGGTTAAATTTGTATTTTATTACACACACACACACACACACACACACACACACACACACACACACACACACACACTGAATAACACCGCTTACTGCCTCAGAGACAATATAAAATCTTACCGCTTCTTTCTCCTTTCCCTTTTTCTTGTTAAAAATTCTATAAACTTTTTACCAAGATCCTCCTATATGTCTGTTTTTGACTTAGACATTCAAAATGTCTAACGGTCATCTGGCATTTTCCAAAACTTCTACAGATTTGAGGAACATTTAAGGAAAGTTTGTAAATGCTAATATCCAACATAATTAGTACTCTCAAATTGCATGTTCCAGCAGATCAAAAAAACAAAAACAAACAAACAAAAAACCTGGCAAGGTATTTACAAACCATAGCTTTCCTGGGATACACATAAGTCAAATACATAAATATTGAGTACTTATCCCACTTTATTGGTAAATTAGCTTATTAATTAAATTAGTTCCTTTTAAATTATTTTTTCAAATCTTTTACATAAGTGAACTAACTGTATTTACATTATTTCCTCTGTTCCCTCTCCATGTCCCAACTCCTGAATCGCAAATGTTCAACCTCCTCTTCTTTAATTATTATTGTTTTATACACACATGCACGCATGCATGTACACGCATGGCCAAGTCCACCTAGTGGTGCTTCTATGCACACGTAGGGATAACCACTTAGGATTGAATTTGCCAGGAGCTCAGCCATGGAGAGAACGAAGCCTCCCTCTGTCAGCGGTCTGTAGCTCTCCATCTAGGGCTGTGGCTGTGTGAGATTTCCTCCATCCTCACTGATGTGTTGGGATGTCAACTCATTTTTCAGGTCATGTTTAGGCAGCCATGCTGTTGAGAGTTCACGGGTGCAGTTTCCCTGTCACATAAAAGACATGGTCTCCTAGCTGATGTCCTGTCTTGTCCTTTGACTCTTACAAACCTACCACCTCTCTCCAGCAACAACCCTGAGGCCTTAAATGGAAGGGCTGCTTTACCATGTGGGGCTACGCATAGCACAGTCCTTTAGCTATGCATTTTGATGTGTTGTAGGTCTCGACACTAGCTTCCATTGAGAATTCCATCCATGCACACAATGTTTTACAGTTGTACCCCTTCCCCACCTTCACAGCTATTTGTCCCGTCCCCTTCCCAGAACCCCGCATATCCCATCCAACTTCATCTCTGTCCCCTTCTCATTTGTTTGAAACCCAACCCAACCAGTCGGGACAGTGCTGCTCATACGAGCATAAATGTAGGGTCATCTACTGGAGCATAGACAACCTGCCAGGATTATACCCCAGAAGAACACAGATCCTCCATCCCTCGCTAAGAATTACCTTTCAGCATCTCCTGCGTGGAACCCTTTGGGATACTCTCCTGTTCATGCTGAGCCTGCCTTGATCTTACTAAGGTCTTGTGCAGGCAGCCACAGCCTCTGTGAGTTACTGTTGGGATGTCCCTGTTGTGGCTAGAAGACACTATCACATAACGCTCTTCCCTATTCTCTGACTTAGAATCTTTCCATTCCTTCTTCCATGATGTTCCTGAGTATTGAGAGGAGGCGGTGGAGTACAGCTCAGGACCGAGCAGATCAAAATCACTTATTCTTTGTATTGTGACCGATTATATAATCTCTGTATCAACCTCCATTCACCACTAAAAAGACAGCTGCACTTAAATTAGGCACATTTATCATTATTCATTAAAAAAGAATGCCCTCTCTAATGCCATTGTTAATATAATAGAAGGCCATTATTTGTGTCATAGAAGACATAATAGAGTTTATTGTAAGCAGGGGACTCCCTATTCTTAATGTTTCCGCCATTATCTTCCTGTGTGAGGCTCTCCCACCACTCGCTAGCCAGATACAAGGTCATAGAGATATTAGTCAACAACAGAGTGGAGCCTCAGAGGGAAAATGTCTGTGTGCTTGTCAGAATTTTTAGGATCAGTACCATCTACCTCCCTTGACAGACTGTTATCAACCCCAGGACCCACTTCAGATGCCCAGAACCAGATGGTCTGCCATTGTTGGTTCTCAAAGTTTGGTGGAGACTTCAATCACCTAGACAGCTTGTCCTACAGAAGTAGCTTGGCCCCCACCAGTGATTCTGTTCTATTCAAGGCAGTGAGGCTGTTGTTTGGTAAATAGACAGCGCACTCTGGAATCCACCACTCTGAGATCTGGTTCTCATGTGTGTTGGGCATTGCTGGGAAGCTGGCTTACTTAGCTGATGCTTAGGTACCACCATCAAAGGCTCGGAATTAAATGTCTAGGGTAAATCTTAGCTGTTCCAATATTTTTGAGAAGTTCCCTGACAATTTTCACCTATAGTTTAGTTTCAGAAGCCCGGTCTCTTATGGTCCTGCTAAGGGAGCAACTCCACGCTTCTTAGTTTGATATTAGACCATAGCAATGGGATTCAGGAAGACACAGGAGTTCTCCAGAGCTTGCACATTCTTCAAACTCTCAAAGCCAAAACCTCAGGCCAAATTTATGAATCACTCCTTCATTGATTGAGTAAACGTCACTGCAGTCTCTCTGTGGATCAGGTTCTCTTGTGGTTGCTAGAGAGACTCCTGTAAGCAAGCGCATGGAGCTCGCATCCCACACCTTGTGGTAAGCTTAAAATAATTCCAGTTCAGATTGGGATATGTAATGCACTTATGAAATTTATATTAAACATATACATTATATATAAACAAATGTGTGTAGTAGAAATACACATATATACCTCCCACAGAGAGTGTCTCTCAGCAAAGAGTTGTCTCCCTCATAAAATGCTGTGCTTAGTGTGTGTTTGTGTACACGTGCATGAGGGTGCATTGACATGTTCTACTCATGTTGGGGTGGGGTCAGAAGACAGCCTCCCTGGGTTTTGTACATCAACACTACAACACCCCAACACCCCACCCTCCCATCCCCTACCCCACCCCACCCCACCCCCACCCCCACCCCTTGGCCCCCAAAAAAGTCTCTCTCATTGGTCTTGACCTCTAAAAGAGAGACTAAACTGGCTGTCCAGTAACAGCCAGACTGCCTGCCTCCCTAGTGCAGTGTAGCACTAACCCCTTTTGCCCAGTGAAATGTGGGTGCCAGGGATCAGGCTTAGGAGACAAGATTTTACTAAGATGTCTCCCCGAGTCCCAACTTGTTCTTAATTCAGTATCTTGATGCTTCCTCGGTACATCCTCAGTGTTTCTCCAGACAATTTGGAATGCTGTGTGTGCTCAGATAAAGTGCCCAGCCTCCCACTTGCCAAATACCACCCCAAAGGGCAGAGGTACAACGGAAGTTTCCTGTGGAGAGCATCTATCAGCTCTTCTTCCCCCCTCCCTTCATTTCCTTGCTCTCTTCCCAGCCCAACCAGCATTCTTCCTTCCATACCCTTCCATGACAGCTTCTCTCTCACACAGTGTGAGATGCTACTAGCTTTTCACACCAGGGACTCCCCCAGACCCTTTCTCCTGCCCTGGGTGAAGCTTGGAGAATCTAGTCATTCTGCCCATAAGTAGATGACAATTGGGTATTTTCATTCTAATGCAGATTTGTCTCTGAGCAAGATTAGAGGAAACTGTCTTTCTAACTCCACCCCAGCCCTGGTCTTTTGTGTTCTTGTAAGTCAAAGAAAGCAACTGGCTTTCAGTCGAAAGACACAACAGCAGAGGTGTTGTTCTGAGACATCTAGAGTACACTTTTAATAACCAGAAAAGGAAGCACTTTTAGTGTTTCCAATTTTAATTGATCTGTTTCCTCTAGTTTTTTTTTTTTTTTTTTTTTTTTTAACTGAAAAACCAAGCTTACTCTCGTGACGTAGCACTTTTCCCTCCGTTTAACTCTTGACCAAAAAGTCTTAACGGCAAGACAGCAGAATAAATTCTAAGTAGTGCATCTTTTATGTCCCGGTCTAAGTACGCAATTCGGTCAGTTTTCGGTGGCTGAAAGTGTGTCTCCTGGAATAATGGGAGCGTTTAATGCCTGGAGTTTTCATTAAAGCTAGCAGAGAGAGAGAGAGAGGGCGTTCTGAGAGATCACCGGTTGGGTGGCCTTTAAATGTTTCTCCTGTGACTAAAACCTCTTGGAACTCGGAGCAGACGCATGCCTCTCGCCTCTTTGTCAGCGGGCCTCTGCTAACCCGCTCCTTTCCCTCCTTGGAAAGGAACCGGGCTGGGAACGTGCTGGGGCGTGGGTTCGCGTCCCTCTCCACGCGTAGCCTGGGCGCAGAAGTTGTCTTCTGCAGCCGGGCGGGGCGGGCGGGCGGGCGGCTGCTTCTCCACCTCTGAGCGCGCCTGTTCTCTGCTCTCCCTCCCGGCACAG
Seq C2 exon
GGCACGACCGGCCGCGCGGGGCACCTGGCGGGCTCCGAGCCTGCGCCACCGCCTCCGCCTCCGCGGGAACCGTTCGCGCCCAGCCTGGGCAGCGCCTTCCACCTGCCCGACGCGCCGCCCGCCGCCGCGGCGCTCTACTACTCCAGCTCCACGCTGCCCGCGCCGCCGCGCGGGGGCTCCCCGCTGACCACCACGCAGGGCGGCTCACCCACCAAGCTGCAGCGCGGAGGCTCGGCCCCCGAGGGTGCCGCCTACGCCGCGCCGCGCGGCTCCTCGCCCAAGCAGTCGCCCAGCCGCCTGGCTAAGTCCTACAGCACCAGCTCGCCCATCAACATCGTCGTGTCCTCGGCCGGCCTGTCCCCGATCCGCGTGACCTCGCCCCCCACCGTGCAGTCCACCATCTCCTCTTCGCCCATCCACCAGCTGAGCTCCACCATCGGCACCTACGCCACCCTGTCGCCCACCAAGCGCCTGGTCCACGCGTCTGAGCAGTACAGCAAGCATTCGCAGGAGCTGTATGCCACCGCCACCCTCCAGAGGCCGGGCAGCCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022240:ENSMUST00000081728:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.941 A=NA C2=0.832
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types