GgaINT0098061 @ galGal3
Intron Retention
Gene
ENSGALG00000009686 | PPP1R9A
Description
NA
Coordinates
chr2:23766298-23775253:+
Coord C1 exon
chr2:23766298-23766433
Coord A exon
chr2:23766434-23775097
Coord C2 exon
chr2:23775098-23775253
Length
8664 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACA
5' ss Score
8.1
3' ss Seq
TTAAATGCTATGAAATTAAGACA
3' ss Score
-2.15
Exon sequences
Seq C1 exon
GTTTGTAATTGGCCGAGAAAAACCAGGCCAAGTGAGCGAGGTTGCGCAGCTGATTAGCCAAACTCTGGAACAAGAACGCCGCCAGAGAGAGCTCCTGGAGCAGCATTATGCACAGTACGATGCAGATGATGATGAG
Seq A exon
GTAACATGCTTTCTAATGTTTCAATCTGCAGAGGGTTTTAACGCTCTGCTTTCTGTTTTCCTGGTTCCTGCTTTTTAAGCGTCGCTCAGAGGTCAACTTTGCACGTCTCCATTGTCCCTGCCACCAATTTTTAGATTTTGGTGATAAGCCCAATGTGAAGAACAAAGCTTTATAACATGGATTTAAAATATTTATTTTCTTCCATAGAAGCATTTATACATTTGGTTGATGTCTCCTTAAATCATTGCTCTTCCAAACGCGTCTGCTTTGTTTGAAATAAGGGAATAAAGCTGGTTTGCTTGTGCATGTTTTGAAACGTTGTTTTTCTGTGGACAATGGTAAAAGTCACCTTCCAACTGTTATTGAGTTGGGAAGATTTAAACCTTATCTTTTTTCCTAGAAGAATTAATGATGTTCGTGATTCAGAACATTAAGAAATGTTCTGAAAATTCCAAGTAAGACTCCTCCTTCCTTTTTTATCTACGTGTACAGCTGTCCCATAGGACAGAGGATTACTTTTCCTTGTCAGAAGCGTTTATTGATGTTCATGATCAGTGCTTGATGTCCCAATACAAGGGTTTTGAAGCTATCAACTTCATTCCGTAAATTTTCCATATTTTTTCAGTTCTCTTAAAATTCCCAGCATGCCTGAATTCCAAGGTACTTAGAAGGACTGATGAGAGATCTTTCTCAGAGACTACTGTTTCACCCCTAAATTAGCTGCTAGGTTACATTAAGGTAAAGGCTGATGCTGTAGCAAACCACTTTCAAGTAGGCTGGGCATACAACCTTCTTTTCACATTCTCTTCAACAATATTGTTTGAAATCCCAGACTCCATGTATTAGTGAGTTTTTGCCCAGGCCAACATTTTTTTTGTTTGTTTGGTGAAAGAGAATATTACGGAATATTTTGAACTGGAAGGGACCCATATGGATCATTGAGTTCAACTCCTGGCTCTACACAGGACCACCCAAAATCATTACTGAATCATCGAATCATAGAATGGCTTGGCTTGGAAATGACCCAAAGGATCATCAAGTTCTAAAGATACAGAAGGGGAGACAGAGAATCCGTGCAATGCATTTAATTCAGATTAGTTTTCTTTCAGGTCCTGAGACTAGGCTTCTAAACAGAGAAATAGGAGAAAAGTACTCTGAAGTAAAATAAGGATGCATTTATTTTGAAACACACTGTTAGTATAGCAATTAGCATCAGAAGTATCCCAGAAAACTTGGTAAAAATCCTCTAGCCCCAGTGATGTCTTCTGTCACTTCAATTTCCACTGACATTAAAAATAGAATATTGGAATATGTATTAGAATGAATCCTATCATAGGTGCATATTTAACTCATATGAATAGAAATTATATATATTCGGGATGCACATCCGTGTGTGGCTGTGTGAGACCATGAAGGCTAGAAAATCCATATCCTCTCTGTTTCCTCCTCAATATATTAGAAACATGCAAGTATTTTGACTCCTGTTTTTTCTAGGTCTAAAATTCAAGTTGCTGAATGATTTCTTGAAGGACAGCTGTCCTCATCTCAGAAATAAAGAAGAGACAACTCTCTCTGGCTTTTGGAACTAGAGCCTTCTTTTCACAGCTCTGTACTGAGGATGGTGGCCATGTCTGTGACCACGAGGTGTACATTTTGGCCACTAGCTTATGTGGTGCAAAAGGGACTTCTATGCAATATGTGAGGTAAAGAGGAGGAAGAAAGGAAAAGGCATCTTCTAGCGGAGATCCAGAGTGTCATCAGAGATCTCTTTTGAAAGGAGAAGTAATTAGGCTTCTGAACAAATGTAGAAGTGCATCAGTTCTCAAAAACAGCCTTGGGATCACTGAAGGTTATACCCATTTCCTCCATGACTGTGTGGGTGAGAAGTGGTAAGCCTTATTCTTAGAACAGACAGATATAGTTACTAAGGTATGCAGTAAGGCATGTTTGCCTTCTGAATGGTATTATTAAGAAACCTGAAGCAGTCCTGAGCATGTTTCATTTTTTTCACCTGACTGTGCCTTCCAGGTAAACTCACATAACTTGCACCCAAGCAGTTATCACAATGGGATCTGTACTGTAATGCACAGTAGCTGCAGTTCAAAGACATTTTTTGGTCACTACAAGCACTTCTGCTCCATTTACTATCAAATATGATCATTGGTACTTGAGCTCACCTTACTCTGTTTGGTCAAATGTGGATGTATCCAGACTCCACTACCAGCCTTGTGTTCTTTGACTCTGGAAAACATGCCTTCTCTTGGACAAGATAATCTCAGTTTACACGGTCTGAATGAATATGCATCCACAAATGTACCAAAAAACTCTACCCTTTCAAGTCCATTTGCTCACAGTACTTGTTATTCTGACTGTATGAAGCTCAGGAGTATTAGAATTTCCAGTGTAAGACGTGTCCTGCTGGTATGAGACAGAATTTTACAAGAGTTGTTCACTCTCAGAGCTATCAAACCATCCTATTCATTTTCATACAGTATTTAAAATGAGGTGGCAGGGATTCCAGCTGCACTGCCAAATAAATAAACAAGAAAATTATCATTATTCAACCCTCCACTGAGGCTGTCAAATTCTGAGCCTGCTTTACCACAAAGAGAGCAATGTCTTATCAGATTTCCTGAGCAGGAAATCAGCGATCTGAATTTGAGTCCTAGAGATGCTGCATGTGACTATGCTTGGTAAAGCAATGAGCTGATGAAATCACAGGAAGAGAGCACATTCCAGGAATGTTCAGATCTGGGTGTCTTATCTTGCTGGTTTACTAGCTGGCTGTCATTCCTCTGTTTTGAACATCAGTAGTCTTTATGGTAGCCCAAGCAGCATATAATCATTCTAGGAGAGTGAGAGCCCTTCAACATAGCAGCATTACTGAGAAAATTTTGACTTGCGTCAACCAACATCTGTTGGACATCAGTCAGGTGCTGAATTGTAGAGATACTTGTTTGCCTGCTGCACCTTCTCATTCCTTCACCTTGTGGGAATGTTTCCAGTCAGTTATTTGTTGAAGACAATTCACACTAATACACACCACCTTTCCAAAATAAACATCACTTGATGTAAAAGGAATGTGAAAGGTGAAGTGTCCTGCATACACTTCAGAATCTGCTGTTATATTAGGCTACAGATTGTTGCAGCTTCTAAGATACTTTCAGATCCTGCTGCATCATTCACGTCTTTGCATGGAAATACATGAAACTTGTACAGAAACTTTGCTTGCCATAAAAAAAAAAAAAAAAGAAAGAAAAAAGAAAGGTAGGATATGCCCACAGTGGGATCCAGGCAAAGACAAGCAGGATAAATGTGTGACAGCTCACAATTTCTTCTTACTCCCACAAGCCAAGCAGAATCAGTAGTATCAGTAATTTCTCGAGTACTGCTTAGGTGTGGCAGTGCTGGCAATACATACAGTGGATGACATTTCCTTATAAGCCTGTGCTGCCTCAAATAAATATGAGAGAATATCTTGCTTCAGGTGCTGCCTCTGGATAGCCTGCTGCAGAATTTACTCATCACCAGTTCCTCCGGCTTTCTAAAACCCCTCATGCCTTTAATTTATCGTATCCTGTCAGATAACAAATCTCTAAGCCCTTGAAGGAGGTGCTGTCTTTGTATTTCCTACTGAAGTGTACTAAATTATCCTGAATCTGTATCCTTGACTGAAACCTTTAGACTTTGCTGTGTTAACACGGTGTTCTCTGCACACTGTAGTCCAATTATGACATTTCTTGGAATTTTAATTTGAACGTGGAACCATCTTCTTCATGTTCAGCAGTGAAAGGCAGATGTTAGATCAAGCAGATGACCCGCTCCCCTGAAAGCTGCACATTGTAATGCAGGATGTGAGATTATTAACGTGGTGCAAAATTCTCTTCTCTCTTTGGCCAAGCCAAGTAGTTGTATGCAAGTGAAGTCTTCGTGTCTTTCAGTAACACAGATAGTCATTTGAATGTTTTTTCATTTTTAATTCTTATTTATAGAGACATTCTGAGAGGAAAGCAACTGTAGAATCATGGAAGACTATCAGAGACACAAAAAGCAAAATGGAGCAATGTGCTTCGGTGTCTAAAATGCAAAGAATACATTGATAAGACAAGATCTTTCAGGGAATACAGTTTTTCCGACATCATTAATATGAATTACTTCTTTAAAAGCAATGATTGATACTACAGCAATACTTTCTTTCCTCTTTGAAGAATTGAGCTTAAACTACAGAAAAATCAAATGAAGAGGTGGATTTGGGTTATTTTTATAGTTCTTCGAATGGTATTCTGTGATGGTGGGATTGTTTCAGCACAAACAAAGGATTTAGCTTGATGTACCCTTTGTTATGGTGATTGGGAAAGGTCTGTCTGCATTTTCTTGGCTGGTGCTTCTGCTGCTTCTTTGTGCTGCTAAGGGTTCAGCCTGTTTCAAGAATTTACAACGCAGTTAAACAATGTGAGTACTGCCTTCTCCCTTTTAAAATGGGAAATTGCAGTTCATGTTTATAAAGATAACTTCATGCTGCTTGCTGTGATGGTGTATAGCAAAATTAACCAGCTAGTAGCAGAAGCGATCCTTGTGGCTGGGGAAACCTTGACGTCTGTGTACTACTAAAATGATAAATAGGCTTTTGCTCACCTGTTTTGCATGGATGAATTCCGCTCACCCGTAAAGACTGACGAGACTGAGATTTTGCTTCAAGAGCATGTAAGTTTTCATTGGCTGTTGTACAAAAAATATTATTCTTGTCAAGTAGGAAAACAAAATGAAGTGCTCGAAGCCTCAAGCAGTTACAATAACAGCTGTTACTTTAAAAAGCGTTGTTATTTTGGAGTTAGGTAAGCTTTTGTCTGTGTCTAGCTGCTTCTCGTAAGACACAAAATTCCTTGTTCTAGTTCTCTGGCACAAGGGCTGAACATCCTTTGGTAGGTTCATGTGATGTAAAAGCAGAGAGAATTCATTCAGGGAAAGTATGTATTATGCGGTTTGCAACATCTGTTTCTTTAAAGCATAGGTCGGTTCTTTTGAACCTGTTATTTGTGCTTCGTGTGATTATAAGATGGGAACATATTCTTTTGAAGATGAGCAAAAGCCCCATTTATTTCTGAGCTGTCTAATGTTTCTGTATCATCCCACTGTCTTGTTTACTACAGCAAGCTGCAGTGTTTTGCTTTGATGACAATTTTTTGTATTAAATGAAGTAAAAACAACTGTGTCTGCTGATGCTCAGTCAAACAGTTCACAGCAAGATTTTTTATGTTTATTCTAATCTGCCTGATGTCCCTCTTCAAACACTGTGGCTCCTGAGGCCAGCAGAGCTCTTGAATTTTCCCCCAATATAACTTAGTCTTATTAATTTATTTATTTTTATTTGAATCTTTGGAGCCATCAGTTGGACCAGCCAAGATGTGGCTTGTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCATTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTCCCTTGCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCGTGTAGAAATGATAACTATCACCTTATAGATTTTTCAGGGACTTTTCACAGGATGTGAACTGTGCTAATGTTTTGTTCCCACAGTAATTCATTGAATGGGAATGCCACTGAGATTTTAGAGTTCTGCTTCTTGCCTGCCTGGTTGTGTGTGAAGGTGCTGTTAGACGTTCCAGGAAAGAGCAGTATAATTTTCTGTTTAGACAGGAACTGCACATAGCCATGGAGGATTAAGTGAAAACAACAGTTATCACAAGTGTAGCAAAACTGGAGATGTGTGTATGAGATCTAGAAAGAATGATAAACTTGGTTTCAAATATCATTTAGCTGTAGTGCTGACGTGCCTGAAAACTCCAGAGTGAGATGAATTGTGTGCTTTGCCTTAAATAAGGGGAAAAGAAGCAAATACGTCTGCTCATTTTTTTGTTGAAGCCTGGTGAGATTTTTAGTACATATAAAATGTGTAAAGTAAGTGATTGCTGTATATTTGATTGCAGACTACATATCTATTTTTTGTATAGAGACAGAGATAGCTCTCCTAAGAAATGGCTCACATTAAATGTTTGAAGTATGGCTGGGCCGTGCATAATGCCTTGCCTTCTTCATGGTAGTTCTTTTAACATCAGAAAACTTTACCAAATCATTCTGTATTTTCCATGTGTTATGTGTTTCTTTGCCTTTTAAAACTTTAGCAGTTTAAATAAATAAGGAAAGAATATTGATCTTTTATATGCTATTTGTTCAAGAAATTGTGATGTTTATATTGCAAGTGTTATCAGCCTGTTGTGGCTGCATGCATACGTCAATTCTGTCCATGCGTGCATGTGAACTTGTGAATCTACACTCAGTGTGCTTCTGTGAACAACTTCTGAGGTAGATTTATGTAAGCCTAAATGACAGCTGAGAAGCTAAATTAAGGTAGGAGGTTGAGATTTGAACTGTTGTTCGGACATCTGAGTTCTCACCCTTGTTTTGAACAGTTCTTTTGACAAAAGTGACACTAGAATAATTTAAGCACTACTCGGAATGTAGTTGTGATAAAAGAACAGTGTTCCTTCACATCAGGAACTGTCATGAAGACTTGTGTAGTACGGTCACAATTCTGTGTTATAAGCATTACTGTATTAATTTGAGAAGGAATTTGTCCCTTCTCCCTCCTTTTTTTTCTATGTGTTTATTTATTCCCATGCTTTATAAATCTAGAAGTAGCCCTTAAAGAAGTGTTTTCTTTCTGCTATGTTTGCACACTAATTGTGATTAGTCTGCAATATAGTGTGGCTCACAGAGGGAGCCCTGCTGAATCAGAGAGGTATCCAGCCACCTTTGGCATGGGGAGTAGAGCACAGGTGTATGTGTGAAGGGTTTTAATATTGGAGCTTTTGCTTTTGAATAGTATTGTTTCTGTCTAATTTTGAGATACTGGTTGTGGCTTTTAGGTTTGTTGGATTGATGTTTTGTCAGCAAATGATTCACGTCTCATAGGTTACCAGCCCAAGAAACACCCATGTTTTTAAAACTGTCTAAACCAGCTCCTTATGCAGAGTGAACATTCAGTAAGCTCTAATTTGTTTCTCAAGGTATCTCTGACACTTGATTTCTTTTTCCCGCTGTAGGCTTTCTACGGAGGTGGGACTTTTCTGTCATTAATTAGTATATAGAGAACTAACCAATGGATTTTCAGATTCAGGATGGAATATCACTGGAGAATTACTACCTCCACATGGCTTAAAAAAGTCCAGTCAAGATCTTGTCCCACATATTCAGCTTACATTTCTGTTTGGAAGAGATCCCTTGTTAAGACTGGCATAAGCTGGGAGAGTTCTTCCTATGGAAAGGAAAACTGTAGGAGGATGTAGTAATTCCGGCCCCTAGAAACCTGTAGTTCCTAAGACACTCTTTTGTTCCATCTATTAATAATCTGAAGTACTACTGTGGAGTTAGGTTATATCTGCTTGGATTATAGCAAAACAAAAATATAATCTTTTTTGTGTGTGTGCAATATGCTGTATTTGCCCACTAGCTTAATTGCACTTTGAACAGCCTATGCTTAATAAGAGGATAACTGGAATTTCTTAAATGCTATGAAATTAAG
Seq C2 exon
ACAGGGGAATATGCTACAGATGAAGAAGATGATGACATGGGACCTGTCCTTCCTGGAGGTGACATAGCTATTGAAGTGTTCGATCTTCCTGAGAATGACGACATGTTCTCCCCCAGTGATGTGGACACCAGCAAGCTCGCTCACAAGTTCAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009686:ENSGALT00000015764:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.457 A=NA C2=0.519
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PD(4.7=8.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]