GgaINT0105039 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NEW8]
Coordinates
chr1:75826594-75827707:-
Coord C1 exon
chr1:75827626-75827707
Coord A exon
chr1:75826751-75827625
Coord C2 exon
chr1:75826594-75826750
Length
875 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAG
5' ss Score
5.39
3' ss Seq
TGATTCTTGTTCACCTGTAGGCT
3' ss Score
9.57
Exon sequences
Seq C1 exon
GGTACCAGAAACAGCTTTCATACAAACACCAGGATGGGTCCTACAGCTCCTTTGGGACACGAGACAAGGAAGGAAATGTATG
Seq A exon
GTAAAGGATGACACTTTCTATTTCCCTAGCTCAGAATCTTTAGCCTTTGAAATGTTTTAGGTGATTCTTATTTTTAATGGACTAAATGGACACAGTTCAGTTAATTTGGATCTCCCACTAAGGGAGGTGTGAGTAAAACTGGAGAGGTTACAACAGAATGACAATTAGGTGATCAGGGTCTGGAGCACATAATGTTCAAGGAGAGACTGAAAGAACTAAATTTGTTCAGCCTGTAGAATAGGAGGCTAATGGGGAGCCTAGATATAGCCTTCTACCACGTAGATCAGGGCTGTAGGAGAGACAGTCAAACTCTTGTCAGAGGTGCACAGAGTAAGGAAAACAGTTTTTCTGCACACAAGTTGCGTCAGGGAAAGCAGGATAGAATGAAAACAAATCTTACCTAGAAGAAGGGTGTAGCACTTTAGCAGGTGTCCAGTGAGGGCGTGGAAACCTCTGTTTCTGCAGATTTTTGCCACGTGGCAGGACAAGACACTGAGCAATCTGTCCGAGCTTTGCTGTTGATCCTTAATTTAAGGAGGTGATGGGACTGGAGACTTCTAGAAGTCCCTTCCCACCCAGTTTATTTCATAATTATTTTGGTTAAAGTAGGAAATTACTGCCATCAGTCATCAAGCTGTGTCTATGCTTTACTCCAGCTTTGAAAGGTTTCAGCACAGTAATGGAGAAATCTCAGGTCAGTTTGTAATACCAGAATTTTAATTATTTATTTAAAATGTACAAAAACACTTGTTTCTTTTACCACAGACATTATGGATTTCATTCTATGTCCATTTCTATTCGTATCCAGTTACTGATATACCTTCTCTTAAACTTGTTCATGCTTTACCTGCTTTCTGATTCTTGTTCACCTGTAG
Seq C2 exon
GCTCACTGCCTTTGTATATAAGTCATTTGCACAAGCAAGACGGTACATCTATGTTGATGAAAATGTCCAGTCTCAAACTCTGATCTGGCTGGCAAGAAAGCAGAAGTCAGATGGCTGCTTTGAAAATGCTGAGTCACATTTCAACAATGCTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011930:ENSGALT00000019460:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(10.8=100)
A:
NA
C2:
PF076789=A2M_comp=FE(20.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACCAGAAACAGCTTTCATACA
R:
TTCAAAGCATTGTTGAAATGTGACT
Band lengths:
238-1113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]