GgaINT0116830 @ galGal4
Intron Retention
Gene
ENSGALG00000015842 | TIAM1
Description
T-cell lymphoma invasion and metastasis 1 [Source:HGNC Symbol;Acc:HGNC:11805]
Coordinates
chr1:103790946-103793778:-
Coord C1 exon
chr1:103793606-103793778
Coord A exon
chr1:103791634-103793605
Coord C2 exon
chr1:103790946-103791633
Length
1972 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
TTATCTTTGTGTGTGCACAGTGT
3' ss Score
8.53
Exon sequences
Seq C1 exon
TTCACCAGAACACAGGAAGGACTTTCTGAAGGCAGTGCATTCGATTCTGCGGGATAAGCACAGAAGGCAGCTTCTTAAAACCGAAAGTTTGCCCTCATCCCAGCAATATGTTCCTTTTGGTGGAAAAAGATTGTGTGCTCTAAAAGGTGCAAGGCCAGCCATGAACAGGGCAG
Seq A exon
GTACTGTAGGGCTACAGACTTTCAAGATCCCAGTAACCCCAGCACCATTGTAGGATGTGGTGGTGTCTGATATTTGCACATTACTGTTGGCGTTCTCTCTTGTGTATGTAAAAAAAAACAACCTGCTGTTTTTCCATGCTTCACCTCTTCCGGAGCCTTAAATTGCCTCTATTTACCTTGCTTTGCACTCGAGGCTCAGCTTCAGAGCGGTCCTCCTGGCATGGAAGGGAGAAAAGGGATTCCTGTCGATACCAATTGGCTGTGCACTTTAATCTGGAAATGGGTCTCAACTGAAGAAAGCAGAAGCCCACTGCATATTTTTTTAAACAAAAGCATGTACAGAATTTTTGAACTAACCCAAGCACTTTTAAAGTAAAATGCACAAGAAAGATCTGCGTGAGGGATGTGGTTTGAAGAGACAGCTCGTTATGCCCTCCATTTTAGCCTTTTCAGCTTTATGGCTTATAAAGGCACGTGCTTCTACTTCTCGCACTTTGAGAGGCATACGTTTGATATTCTTATTGTAATGGTCTGTCCTAAACCGTGGATTTTCCTTTTCAGTTGACTGCAGGCAAAAGCAGTGAGAAAATCCCAGGGAAAAGCAGGTTTTCATTTTCAGAACACTAGATGATGGAGGGATGAAACACTTGCTTCCAACTGAAAAATACACGGCCCCGCTACGTGTTTTGTTCTGGTCTGTTTTTTGTTTTTACTTTTATTTTTTTCTGCTCATTAGATCCAGCAGTGTAGACAATCAGGCTTTCTGTTCCTCTTCTGTAATGGGCAGGCCAGACCAATAGCATTTTTAGCAGCATGGCTTCTCAGTTGAAGCGATGTTAGCCATCTGCTTCACAGACACTTAAAATCATAGGCAAGAAGATGCGAGGGAAGGCCAAATTGCAATGGTTTTAGCAGTGCTCCTTCAGTCAGCCTGTGGGGCTGATGTGTGGATGCCAAACCTTATTTTATTTTGGCTTGTCAGTGCATTTGCGTGATGAATTCTGCTGAGATGAAAATCTTTCGAAGTCCAGACCTTTTGCTATAGTTAAAATCTGCAACTGCTTAGCTGCTATCCTTTGTGCATGTTTTGAGGCTCAGGGATATTAAAATATAACCCATGCTCCCCAGGCTGCTAGAGATCAGTGAGTATTCTGCAAGTGCTAAGGTGCTGTTGAGTGAAGAAGGACAAACTATAACCTCACAGTTCACCTGCTTGCAACAGAACTGAGTGTGTGCACGTAAAGCACTGGGATGCTGCAGGTCCTCCTGCTGCAGGACTCATCCCCTGCTTTTTTGTCACACAAGCCTCTTAGGATGATGTTCCAACACAGAAGATGTGAATTTGCTAATTGGGCCATTTGCAAAAGCTAGTAGACCAGCTGATGCTGAGTAAGGAACTTCTGAAAGGGTTTTTTTGTTGTTGGTTTTTTTTTCCTCTCTCTTCCCTCCCTCTTCCCTGGCAGGGAGAAAGTGGAGAAGAGGCTAGCACAGCTTGGATCGAAAACACACCATAAATAAAGCAACAATTGCAGCACCTTCAGTAATGAGGTAGCTGTTTGGAAACCTGTAATGTTGCTCTTACCCGAGACAAAGCAGTTTCCCATATTGAGGTGTAAAGCTAGCTGGGTTTTGCTGTGTACTCACGGCAGGGTGCTTCTTGCAAGAAGCTGAGCTGAGCAGATGCACTTTGTGCTGGCTGGCTGCCTACCACTTAGGAGGAACAGTAATTGTGGGCCATTATCCCAGCCATGGATCTGAGTAGCAGAAACTCCTTTTTCAGCTGGAAAGAGACTTGTGCCGAGGAGCTGAGTGAAGCCCACAGGGAGGATGCGGAATGACTAGGTCATTCTTGGGAGTCTGCCCGGTTTGTGCCTAGCGGTGTTAAATAAAGGGCCCTTGGAAGACTAACTTTTTAGAGAGAATTGTACCGTGTGTAAAAAGCCTCTGGGGTTTTATCTTTGTGTGTGCACAG
Seq C2 exon
TGTCAGCCCCAAGCAAGTCTCTTGGGAGGAGGAGGCGGCGGCTGGCCCGAAACAGGTTTACCATTGACTCAGATGCCGTCTTCACAAGCAGCCCCGAAAAAGAGCCCCAGCAGCCCACGCACGGTGGGGACACTGACCGCTGGGTAGAGGAACAGTTTGACCTTGCTCAGTATGAGGAGCAGGAGGACATCAAGGAAACGGACATCCTCAGCGATGACGATGAGTACTGTGAGGCCATGAGGGGTTCCGTGGCCGACCGAGACCTTCGGGAGCGGCTGCAGGCAGCCTCCATCACATGCCGCGGAGACCGCTCGCGCCCTGCCATGGACACGCACGCCTCCAGGATGACCCAGCTGAAGAAGCAGGCGGCCTTGACCGGCATCAACGGTGACGTGGAGGGCCACGGCGAAGAGGTCATCTGGGTCAGGCGTGAAGACTTTGTCCCGAGCAGGAAACTGAACACGGAGCTCTAAACCGGTCCCCTTCCCTGCCCAGAGATGCGTAGGTCTCCCCATCCTGCCCGCCCTCCCTCCCGCTCCCGGCACACCACCGAGAGTGAGTCCCCATAGATTGCACACTTGCACACACCATTACGGCAGCTGAATTGGTCTGAAGCCATGCGGCCACACTTTAGGCAACTGTAAAACGCTCAAAACTTGGAATAACCTTAAGGTCCTGTCTTACGTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015842:ENSGALT00000025542:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.119 A=NA C2=0.573
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(12.9=28.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGGGATAAGCACAGAAGG
R:
CATCGCTGAGGATGTCCGTTT
Band lengths:
343-2315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]