RnoINT0150922 @ rn6
Intron Retention
Gene
ENSRNOG00000021569 | Tiam1
Description
T-cell lymphoma invasion and metastasis 1 [Source:RGD Symbol;Acc:1307455]
Coordinates
chr11:29933163-29937047:-
Coord C1 exon
chr11:29936875-29937047
Coord A exon
chr11:29933633-29936874
Coord C2 exon
chr11:29933163-29933632
Length
3242 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
ATTTTTGTGTGTGTGTGCAGTGT
3' ss Score
8.23
Exon sequences
Seq C1 exon
CTCCCCGGAGAGCCGAAAGGATTTTCTGAAGTCTGTACACTCCATCCTGCGAGATAAGCACAGAAGGCAGCTCCTCAAAACGGAAAGTCTTCCCTCAGCCCAGCAGTATGTCCCTTTTGGAGGCAAGAGATTGTGTGCGCTTAAAGGCGCCAGGCCAGCCATGAGCAGGGCAG
Seq A exon
GTACTGTGGGGATTCAGACCTACAAGATCCCCGTCACCCCAGCTCCACTGTAGGTCGGGGCGGGGGGGGGGGGGGGGGCGGGCAGAAGTTAGGTATGGCCGTGTGGGGGTCGATGTAGGTAGGGTCCTTTCTTTCACCATGTGAGGCTCACACCTTGTCTCCCTCCTTGTGGGTTCTGGGGAATCTTCCCTTTGCTCAAGGTCCTTCCCTTCCCTCCTTCCCTTGCTGCCCTGCCACCCCCTTTGGCTGGTACGCTGCTCTCTCATTGGCCAAGCCCATGCATCCTCTTTGGAAGGGGTTCTCCCAGCCTGCTTGTGGAATGAGAGTCTTGCTTTGCATGACAGCCAGCTTTGTTTAGTAAAAGCAGAGAGGTTAGCGTCAATAAGGTCATAGCGCCCTCTACCGAGAACACAGTGACTTCACAGTCTAGCAGAAGACGATGCCCCTCACTTTGTGCCTACTACTCTAGTTTCAGTCTCAGGGTTAATTTAAGGAAGGTCTCAGCTGCTACTGGAAAAAAAAGAAAGGAGGGTTTAACTGGTCCCCAGTAAATGCTCTTGGAGCACTTATCCCATGTCTCTGGAGCAACGAAGAGGGAGCACCGTTGCCACCATGAGCAGATGGCAACAGAGCAAGCCGAGGAGAGTGGTATTTTCCCAGTGGTGGGCTCGCACAGTACCATCAGCACCCTAACCTCCTTTCCAGAGATGCAGCCCAGAACATCTCAGGGAGGAGCACAGTAGACTAAATTAACTTTACCCGGGCAAACAATCAAACCGATTTGTACCTTTGACCCAGTCACCTTCCCACCAGTTCTCAGTTGTGTTGCAGAGGTGCAGGAAGAGCTGTGGCGTCATAGGCATAACCTGCCGACCTTGACACGGCCTGTGACACTCTTAGGTACCTTGAGGTTAACTATTGGATGTTGGTGGAGGCTACCGTAAGTCTGTTCTCTGTTCCGCTGATATGCTTGTTGAAAACCTAGAACCCAGAACCCCGAAATAGCCAGGATCTCCAAATAGCCCGACAGTCGTGCACGCAGCCATACCTACAGCCTCTCAGGGAGCGCTCCATAAAGGCAGTTTATCTCCTCATGGCAAGAGAGGAGTTGGTTGAGGTATTTTAGTGTTCCTCTTGTTTGCTGAGGGGTATTTGCTTGGGAAATATGCACCAGCCTCAGGGACCACCAATGACTCTTTCTATTTAGGGACCTAAATTCAGAAGTGCATTTACAACAAAACAAAACCCAAACACACGCACCCACATTTCCTCTACAGGATCTACGGAAGTCCTTCTCCTGAGATGAACTTAGAAATAAAACAAGCCCTCTACCTGCTCTAAACCGTTACAAATGGCAAGAGAAAGCCACAATGTTACAGCCTCTTAGAGTCATACAATTGAAAGCGTGCGGTTTTTTGTTATTGTTGTTTGGTTCTTTTCTTTTTTTCCCCCTGCCCAATGGCTCATTTTTGGCTGAAAAACCATTTCCATCCACTCTGCCTTTGACATAACTCGCTACATCGCAGCACAAATGTTCCATGATTTGTAAAAGGCGTCCCAGTGGATCAGGCAAAGACTGTCTCTGAGACTGAGGGGGACCCACTAACGCCCTCTTGCTTAGTAAGTGTCCTTTTCATAAAGCGCAGTCAACCCCTACCACACAGTCTGCATTTCCCAGGAGGTGCGTGCAGCCTGGGGATGGTAAAGACAAATGCCCACCTCCATACTTTCCTCTGAAGTGGGATTGCTTCAGACAGGAACTGATTTAAAATGTCTCATATTCTATCATCTTTTCATTGAGGCCTATGGAGCAGCTGAAAGAACCTGTCTCTATATCTATATTCTATAATTAATATTTTGTCCTGTTTTCACTGTCGCCCACCCGTCTGACATCCCCATGTCCCATCTCACCCTGACACACTTCAGAGACGCAGCCACGATGACACTTGGCCCCTAAGTACCATCGTGTAGACAGTCCTCGCGTTTCCAGTAGACAGTAGTAAATGCAGCAATTGGGTAGAACGAGGTTGGACTGCAGTGGGGTTAGGCTCAAAGCAGAGAGACGTTTTTTCTTTTTCCCAATGGAGACGTAGTCTTCATCTCCTTCCGTTGTGCCTGGAGTTTGACCCGTCTTTAAACAAGAGCGGTGTCCTTCTGTCCTGTGTGTGGAGATAACAGAACGCTCAGAACATGGACAGTAGGTGTCTCCTGGCAGTTCTGAAGCAGCCTCACTGCTTTTGAGACTTGGGTTTCAGCACAGCAGCTCCTGACTGGTGTGCGAGTTGCTTCCTCCATGGAAAAGGCCTGTGTTGCATGTCACCTCAGGGTGTCTGAGGCAATAGCCACCTCAGTCTCCAGGGAGACGTGGCATTATTTCCACGAGAGCCACTGTGCGCTGGGAGCATTCATTGCTGGCTTGATTGGAGGCACCGTTTGTTTGCTTGCCTTTAGTAATCCTGACTTCTGGGAGGGCAGTGGGGTAAATTAATAAACCCCAATATTAGAACCTGGAGTAACTTTCTATGACGCACTGTTCCTCAGTGCTAGAGTGTCATCTGTTCCTTCTCTCTTATTCCACTCAGGCACACTGTATTTTTAATTGCACTGTAGAAGAGTTGACGATTCACAGCTTGCAGTTAGGAGTCAGGACCGTGGCTCTGCTTAGCCTCAGAGTTCACGTCTGACATTATCAGAAAGGTTGCAAAGAGTGGACTGGAAGCGCGGTGTCTCTGGTAGCTGACGTACAATCTCCGGGAATGTGAAGCCCTCAGTCTAACTGTGGGTGCTTAAGAAAACTCACATTGGTGTCCCTGGAAAACACTGTCCCAGCCCCGTGCTCCAGAGACAGCAAAATTCCAGAAGCCTCTCTCGGGCTTTTTAAACACCTCCATTCTGGCCAAAGGACCCTTGGATAACCCTGGGGTAACCCCGCTGGTCCAATACTGGGAGAACAACAGACATTTATTTGTGTTTCTTGTCTTGTGGGTACACAGGTTGGAGTAAATTATTTCCTTCTCCACAACCCACAGCCTCTAGTGTTGTCGACCCTTACTTCACATTCTCTGGGCCCACCCATCTTCCCTTCAGACATCTGAGCAAGGTAGACACCACCAGGATGATAAGGGTTAGACCCCAAACTCCTTTAGTCCCATTTACCCCTTACGCTTCTTTTCTTTGCTGGATTTTCATCTCACGGTAAAGCATGTGGGCGTTTATTTTTATATTTTTGTGTGTGTGTGCAG
Seq C2 exon
TGTCTGCCCCAAGCAAGTCTCTTGGGAGGAGGAGGCGGCGACTGGCCCGAAACAGGTTTACCATTGATTCAGACGCCATCTCAGCCAGCAGCCCGGAGAAAGAGCCCCAGCAGCCCCCCGGTGGCGGGGACACTGACCGATGGGTAGAGGAACAGTTTGATCTTGCTCAGTATGAGGAGCAGGATGACATCAAGGAGACAGACATCCTCAGTGACGATGATGAATTCTGTGAGTCTGCGAAGGGCGCCTCAGTGGACATAGACCTGCAGGAGCAGCTTCAGGCTGCCTCTATCAGTCAGCGCGCCCGAGGCCGGAAAACCCTTGATAGCCACGCCTCCCGCATGACACAGCTCAAGAAGCAAGCGGCCCTTTCGGGCATCAACGGAGGCCTGGAGAGTGCGAGCGAGGAGGTCATTTGGGTTAGGCGCGAAGACTTTGCCCCCTCCAGGAAACTGAACACAGAGATATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021569:ENSRNOT00000046486:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=NA C2=0.618
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(12.8=28.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]