MmuINT0160105 @ mm9
Intron Retention
Gene
ENSMUSG00000002489 | Tiam1
Description
T cell lymphoma invasion and metastasis 1 [Source:MGI Symbol;Acc:MGI:103306]
Coordinates
chr16:89787356-89793419:-
Coord C1 exon
chr16:89793247-89793419
Coord A exon
chr16:89789837-89793246
Coord C2 exon
chr16:89787356-89789836
Length
3410 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
ATTTTTGTGTGTGTGTGCAGTGT
3' ss Score
8.23
Exon sequences
Seq C1 exon
TTCCCCAGAGAGCAGAAAGGACTTTCTGAAGTCTGTGCATTCGATCCTGCGAGATAAACACAGAAGACAGCTCCTCAAAACGGAAAGCCTTCCGTCAGCCCAGCAGTATGTCCCCTTTGGAGGCAAGAGATTGTGTGCGCTTAAAGGCGCCAGGCCGGCCATGAGCAGGGCAG
Seq A exon
GTACTGTGGGGATTCAGACCTACAAGATCCCTGTCACCCCAGCTCCACTGTAGGTCTCCAGGGGGCAGGAGTTAGGCATGGTCTGGGGGTGGGGGGCTGATGTAAGTAGGGTCGTCTTCTGTGGTGTGAGGCTCATGCCTTGTCTCCTTCCTGATGGCTTCTTCTGGGAATCTTCCCTTCGCTTGCGGTTCCTCCCTTCCCTCAGCCTTCCCTCAGCCTTCCCTCGCTGGCTCCCCTTTGGCTGGCACGCTCCTCTCTCATTGGCCAACCCAATGCATCCTCTTTTGGAAGGGGTTCTCTTAGCCTGCTTGGGGAATGAGAGTCGCTGCTTGGCATGGCAGCCAGCTTTGTTCAGTAGAAAGCGGTGAGTTGAGGTCAGCAAGGTCATAGCCCCTCTACTGAGAACACCCGTGACTCCACAGTCTAGCGGAAGACACAGCCCGTTCTCAGCGAGGATGCGGACGTGCTCTGGCATGGCAGGCCAGTTGATGCAGAAGAAGTTGACCCTCACTTCGTGCCTGTAACTTTAGTTTCAGCCTCAGGGTTAGTTTAGGGAAGGTTTCAGCTGCTATTGGGAAAGAAGAAAGAGGAGTTTAACTGGTCCCCAGTAAATTCTCTGGAGCACTTATCCCATGTCTCTGGAGCAAAGAAGAAGGGACACCATTGCCACCACGTGCAGATGGCAATAGAGCAAGCCCGGAAGAGTGTTATTTTCCCAGTGCTGGACTTGCAGAGAGAGCCATCCACATCCTAACCCTCCTTTCCTAAGATGCAGCCCAGAATTTTTCAGGGAGGAGTCCAGTAGAATAAATTTCCTCTACACACAGGCAAACAAACAAACAAACAAACAAACCGATTTCTACTTTTGACACAGTCACCTCCCCACCAGTCCTCAGTCGTGTTGCAGAGATGCAGGAAGAGCTGTGACGTCATAGGCGTAACCTACCAACCCTGACTCGGCCTGTTACAATCCTAGGTACCTTGAGATTGACTAATGGATGTCGGTGGAGCCTACCTGAAGTCTGTTCTCCATTCAGTTGATTGAAAACCTAGAACCCAGAATCCCAGACCCCCAAACTGCAAGGCTCTCCAAACAGCCTGAGAGCCATGCATACATCCATGCCCACAGCCTCTCAGGAAGTACTCTGTAAAAACAGGCTGTTGTTTCATGGCAAGAGAGAAATTTGTTGAAGTGTTTTTTGTGCTCCTCTTGTTTGCTGAGGGGTGTTTAATCGGGAAATATGCACCAATCTCAGGGACCCTAACTACCACTGGCTCTTGCTGTTAACTTAGGAACCTAAATTCAAAAGTGCATTTACAAAAAACAAAACAAATCCAAAACACATATGCACTCACATTTTGTCCATAGGATGTACCAAAGTTTTTCTCCTGAGATGATCTTAGAAATAAAAAACAAACAAACAAACTCATTACCTGCTCTAAAGCATTACGAATGCCAAGAGAAAGCCTCAACATGACAGCCTGTTGGATTTGTATAACTGAAAGCATATTTGTTTGTTTGTTTGTTTTCCTGCCAGAGGGCTCATTTTTTGGCTGAAAAACATTTCTATCCACCCTGCCTTTGACGTAACTCACTACCATTGGAGAGTCTGTGTTCCACAATTTCCAAAATGGCGCTCCAGTGGTTCAGGCAAAGACTGCCTCTCTGAGACGGAGAGAGACCCACTAATGCCATCTGGCTTATTAAATGTCCTTTTCATAAAAGGCAGACAACTGTAACACACTCTGCATTTCACAAGACCCGTGTGCAGTCTGGAGAGCGTATAGACAGATACCCCGCCTCCATACTTACTCTAAAGTGGGACTACTTCAGCCAATAACCGACTTAAAATTTCTCATAGTCTATAATCTTTTTATGGAAAATCTGAGGCTTATGGAGCAGCTAAAAGAATCCATCCCTACATCTATATTCCATAATTAGTATTTTGCTTTATTTTCACTGCTGCCCACCCATCTGCCATCTGCGTGCACCATCTTACCTTGGCACGTTTCAGAGGGGCAGCCATGACTGCACTTGGCCCCTAAATCCCACCATGAAGACCATGCTCACGTTTCCAGTAGAGCAGTAGTGAACTGATGCCATTCAGATGTAGCGATTGAGTAGAACAAGGTTGGACTGCAGTGGGGTTAGGCTCGAAGCGAAGACGACACTTTTAGGAGAAGTAGCTTTCCATTTCCTCCCATGTTGCCTGGAGTTTCTTTCTATTGTGCGGTGCCCATCTGGTCTGTGTGTGGAGATAATGGGACTCTCAGAACCTGGACAGTAGGTGTCTCCTGGCAATGCTGAAGCAGCCTCGCTGCTTTTGAGACTTGGGTTCCAGGACAGCTGCTCCTGACTGGTGTGTGCGTTGCTCCCTCCATGGAAAAAGCCTGTGTTGCATTTCACCTCAGAGTGTCCGATGCAACAGTTACTTCGGCCTCCGGGGAGAAGTGGCATTGTTTCCACCAGAGCCATTGCGTGCGTGCGTTCTTGCGTGCGTGCGTGCGGCGAGTGGTGGGAGCATTCATTGCTTGATTGATTGGAATCTCTATTTGTTTGCTTGCCTTTAGTAATCCTGGCTTCCTGGAGGGCAGTGGGGTAAATGAATAAACCCCAATATTTTACCTTGGAGTAACTTTCTGTGGCGCACTGTTCCTCAGTGCTAGAGTGGCATCTGTTATTTCTCTTACGCCACTCAGGCACACTGTAGTTTTAATTGCACTGTAGAAGAGTTGGCGATTCACAGCTTGGAGTTAGTTAGGACTATGGCTCTGCTTAGCCTCAGAGGTCATGTTGGACCTTATCAGAAAGGGTACAAAGAGTGGACTGGAAGGGCAGTGTCTCTGACAACTGACATCCAGTCTCCAAGAATGTGATGCCCTCAATCTAACTGTGGGTGCTTACGTCCCTGGAAAGCACTGTCCACAGCACAGTGCTCCAGAGAGCACAGCAATGCTTCACAGCAAAACCCCTGAAGGCTTCTCTCAGGCTTATCAAACACCTCTCTCCTGGCTACGTGACCCTCGGATAACCCTGGGGTAAGCTCTCTAGCTCTGTGCCGTGGGCACAGTCGTGTTGAGGACAGTCTCTGGCCCAATGCTGAGAACAGTAGACATCTGTGTTTCCTGTCATGTGGGTACACGGGTTAAAGTAGATTATTTCTTTCTCCATAACCCAGAGCCTCTAGTGTTTAGACCCTCACTCCTCACTTAGTCTCTGGGCCCGTCCTTAGATCTGAAGATCCCTTCAGATGTCTGAGCAAAGTAGACACCACTGGGACAGTAAGGGGTAGACCCCAAACTCCTGAAGCCCCATTCACCTTTTATGCTTCTTTTCTTTGCTTGCTGGGTTTTCATCTCACAGTAAAGCATGTGGGGGTTTATTTTTATATTTTTGTGTGTGTGTGCAG
Seq C2 exon
TGTCTGCCCCAAGCAAGTCTCTTGGGAGGAGGAGGCGGCGACTGGCCCGAAACAGGTTTACCATCGATTCAGACGCCATCTCAGCCAGCAGCCCGGAGAAAGAGCCCCAGCAGCCCGCCGGTGGTGGGGACACTGACCGATGGGTAGAGGAACAGTTCGATCTTGCTCAGTACGAGGAGCAGGATGACATCAAGGAGACAGACATCCTCAGTGACGATGACGAATTCTGTGAGTCCCTGAAGGGCGCCTCAGTGGACAGAGACCTTCAGGAGCAGCTTCAGGCTGCCTCCATCAGTCAGCGGGCCCGAGGCCGGAGAACCCTCGATAGCCACGCCTCCCGCATGACACAGCTCAAGAAGCAAGCGGCCCTCTCGGGCATCAACGGGGGCCTGGAGAGTGCGAGCGAGGAAGTCATTTGGGTCAGGCGCGAAGACTTTGCCCCCTCCAGGAAACTGAACACGGAGATATGACTTCCTTGTCCCTGTAGAGAATATGTGTGTAGATATGATGCCGGCCCCACCCTCACTCCGCCCACCCTCCTGTGCCGTCCACGAGAATGTCCCCTTAGGTCGCACTCTTGACACAGATTTTGGCAGCTGACTTGGGTCTGAAGCCATGTAGCCACCCACCTTCATCATTCTTAATGACACCAGAGAGAATCGTTCAGAATCCCAGACAAACAAGCTTGAGTCCTTTCCTCTGTGCCAAGGGCTTTCTTTTATTTATTCTCAATTCATCGGGGCCTGAAGATTTAGAACGAAGAACCGATAGCGCTAGAAATCAAACCGTCCCCACCCCAGCAGTCAAAACAGGGACAGGACGGTGTGCACAGATTGTCCCAGCTCCACCTCTCTAAATCCAGTCTCGCAGCTGAGGAACAACCACCTTCAAACACACATAGAGAAACGGAACAGATGGAAACACCTGTACAGCGTGCAGTGTTCTGACTCCTCCCCTCTTCAGCGTCCGAGAATATCTGTGTATCTTAAGAATGTGTGAGGAAAGGGTGGTCGTCTCTGTACGATGAGCCTTTATTCTTATTTTTTTTTTCTTCTGTTCATGTCTATAGCTGGTCTTACTCTGTGTCAGTGTCTGGAAGCTCTAGTTTTGCAGAGAATTATAAAGATGCCAAACTCTTGGAAAAGAGATCCAAATTTATCACTTAGAGGGAGAGAGAAGAAAAAAAAGAAACACTATTTTTTGTATTTTCCTTGAGATGCAGGGGCACAAATAGATGAGAATTTTACAGTGTTAGGTGTAACTCAGTCTGAAAATGAGGATATAACCTTTTGCAGAGCAAGCGGGGCACGATGACTTTATATTTATACACAAACGGCCAACAAGAAGCTCATGCTAAGAATAAACTTTTCTGAGAAACAGATTTTTTTTTTAAATGTATGAATCTATATTTGAGATGGGAGTTTGGTTGGATTACAGGGACAGGAAATGGGGCAGTGTGTGCGTGTGTCTGTTGTTCATGGTGGGGGAGGGGAGCCTCCTCATGGGGTTGCCATGGCAATCATTGGTTTTCCCATCAAACTTGCATCTTCATCCACAGATGACCTCCCCTTCCCTGAGAGTCCACGGCAGAATCTTAGAACCTCTTCAGAGACGTCCTTTGTGGTTAATATTTCCTCCATGCCAATGAGACAGGGTAAACTCGCTACGGGGCCTAACCTTCTAAATGGATGTCCAGACAGGAAGAACAAAACCCATTCTAGCACTTTCATTTTTAAAAAAAAAAAGGTTTATAGCTTTTTGTTCCGCCCTCCTCCTCCCCATTTCACAATGTCCATTCCTTAAGAAGGGTTTAAATAATATGAAAACTTTGTTTTTGGAAATAAAAAAATATCTATATATCTATATATCTATATATCTATTTGGTGTTTGATACATCGGTAGGTACTTTAAAGACCTGAATTTTATAGTAGCTTTAGCAATTATATTTTATAAGAATCAGTTATGACTTTATATTTCCAGATAGAGAGTTCAGAACACCATGCTCTAAAGCCTCCCCCACCCCGGCTTGCTTTCCTGCTTTCCTGACCTCTCTCCCCCCCCCCCCTTTCGGGTTTCCAGGGCTTTGAGCTTGATCTTTTGAAAGTTTTATTCTATTACAGTTTTTGCTATTACCTTCTGGTTTTCTTAAGAAGCTTTAGAGTGGTTTCTATGCCCTTTGTACCACTGCACTGTTCGTAACATCTCGGGGTCGATTGCGTCCGGATGGGAAACTGAAGCAGAGGTGTCGGATAGTCACATTTTCTGGTCTCCCTGCAACACGTCCATCGGAAAAAAAAATACTGGAAAGTCTGGTGCTTAGAGAGGGTGCCATTGTCTCTTGTATATACGGTCATGATGTGTCTATGTCAAAAGTTCTTATATATTTCTTTTATAAGCTGAAAGAAGGTCTATTTTTATGTTTTTAGGTCTATGAATGGAACGTTGTAAATGCCTGTCCAACAATAAAAGTACTGAAAAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002489-Tiam1:NM_009384:27
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=NA C2=0.582
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(12.8=28.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: