HsaINT0167077 @ hg38
Intron Retention
Gene
ENSG00000156299 | TIAM1
Description
T-cell lymphoma invasion and metastasis 1 [Source:HGNC Symbol;Acc:HGNC:11805]
Coordinates
chr21:31118416-31124694:-
Coord C1 exon
chr21:31124522-31124694
Coord A exon
chr21:31120838-31124521
Coord C2 exon
chr21:31118416-31120837
Length
3684 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
ATTTTTGTGTGTGTGTGCAGTGT
3' ss Score
8.23
Exon sequences
Seq C1 exon
CTCCCCAGAGAGCCGAAAGGATTTCCTAAAGGCTGTGCATTCAATCCTGCGTGATAAGCACAGAAGACAGCTCCTCAAAACCGAGAGCCTTCCCTCATCCCAGCAATATGTCCCTTTTGGAGGCAAAAGATTGTGTGCACTGAAGGGGGCCAGGCCGGCCATGAGCAGGGCAG
Seq A exon
GTACTGTGGGGATTCGGACGTTCAAGATTCCCGTCACCCCCACTCCGCAGTAGAACTCCAGTGAGCTTGACCTCCTTGTTGAGTGGGGGTGAGGTGTGGCCTGGTGGGGGCTGATGTAGGAGGACGGTTTTTCCCTGGTGTGAGGTTCCTTGCCCTTGCCTCCTTCCCAGTGGCTCCTGGGGATCCGCCCTGTATCTACATTCCTCTTGTCCTCCCTCAAGCCTTCCCTTTGCCTCCCTTCTCCTTTTGGCTGGTGAGCTCCTCCCTCATTTGCCAAGTCGGGTTGCAGACACATCCTCTTTCTGGAGAGGCTGTCTCAGCCTGCTTGCAGAATGAGAGTCGCTGCTTTGCATGACAGCCAGCTTTGTCTAGCAGAAAGCCGTGTGTCACATTTCAGCAAGGTCACAGCCCTCTGTTCTGAGAACATGGTGGCTTCACGGCCTGGCAGCACAGCAATGCCTGCTCTCAGTAGTAAGGATTCTAGGTTTGGTAGCCCACATGGCACTTCCAGTTTTTATCCTGACCTTGTGCCTGCAACTTTATTTTTAGTCTCCATGTTAATTTGGGGAAGCCTCGAGCTATTCTTGGAAACAAGAATCTAGAGTTTAAATGGTCCCAGCATAAATATTCTTGTAGGACTTAATCCATTACAGTGGAGCAATAGAGAAATAAAATAAATACTGCCACCTGTCAATGGTAGCAAAATGTATCTAGGAAGAAGGCTGTTTTAATACTTAGGGACTTAATGACATCAAGATACTAACATTTTTATCAAACCTTTCTTAAGAGGCAGCCCAGAATTTTGCAGGGAGGATTTCATTAAAAGAAGGCCCCCTTTGCACTTGCCAGAAAAGTTTCTGGCCTTTGTACCCATTACCATCCTACCTATTGAAGAGGGATGGACAGAAGTGTGAATGCTTGAAGGTTTTCATAGACAAAACCTACCTGGCTTGACATGGGATATTACATTCTTCAAGCACCTTAAATTTAATTTAGGGGACTAGTTACTGTAAACCTCTTCTCCAATCAATTGATAAATGTTTGTTGAAAACTTAGTGCAGTGAACACCCAGCACTTTGCTGAGTTTTCTGATGTATCCTAAGAGTCTTTCATACGTCCATATGCGCAGTTTCGCATGGGGTCGCCATGGAAGAATAGTTTATTGGTCCTTTATAACTCACTTTAGAGATTTTTATCTTGGATTTGTCTTATCTGCCCCTCTTGTTTGCTAGGGAAATGTTTAAAAAGGTTTGGGAATATGTGTCTCAACCTCAGGGAACTCAACCTGTTTCAGTTGTTAATCAATGAACCTAAATTCAGAGCTGCATTTACTTTGAAACTAAGCATGGTTAGTCTGTCACTCAGAAGTTTTCCTGCTGAGATCCATTTGGAAAGAAAACAAAACCAGCCCACAATTTAACACCATCGTCCGTCATGATTACCAAGAGAAAGCCTTGATGTCATAGCCTGTTGGATTTAGCTGATTGAAAGATCTTTCTGCCTGATGGCTCATTTTTGGCTGAAGAAAGTCTGTATCACTTTGTTTGGAGGCATCTCACTATCCTCAGAATCTTCATGTCAGAGGATTTTAAAATGGTGCCTGAGTAGATCAGCACAGCATAGCTGGTCAGTCTTAACAGTGACCACTGGAAATAGTCAAAGATTGCATCCCTGAAAGACTGGGAAGAACCCAATAATGGTAGCCGGGTTCTTAAGCATACTAGGAACAGATACTCATGCTTCATTTTGCTTTGTCTTGAATACTCAGGTAGTTTATTTCTCCCTCTGTTCTGTTTGGCTAGGATAGTAAAGCCAAATACTCTGCTTCCATATTCAGCCTAAAGTACTATACGTTTGCCAATAACCCAATTAAAAATTTTTTTCTTTGTTCTATCTATTTTCTTATGAAAATGTTTAAACTTATAGAAGAGCTGAAAGAATTCATACCTACCATCTATATTCTATAATGTTTTTCTATATTCTCATTATCACTCATCTGTTAGAATCCATCTGTCATCCATCACCTCATCTTATTTTTGACATATTTCAAAGATGTAGACATTAACACACTTTACTCCTAGATACTTCAGCATGCAAATCATTAACAAATATTTCCAGTAGCTTTGAGTTGGGGTAGTTCTAATGTGGTGATTGGAGAGAGGGATGCTGTATTTTGCTGGTGCTGAGATAAAAGTGAACAAGAATTTTTGTCTCTTCTCAATAGAAGTCAGAGTTTGTTTGTTTTTTTTCCTATTTTCTATTCCCTTTTTCCATTTTGCCTGGAAATGGCTTTTATTCCCATCCTCAACCAACAGTAGTGTCCATTTGTTCCACAGTTTTAGATGGCGGAACACTCAGGAATAGTGATGGACACGCAGGGGTCTGAAGCAGAGGATGGCTGCCATGAGAGCCAATTCAGCCCCTCGTTGACCACTCTAACCCTGTGCCTGCTGGGTTCGAAGTCAAGGCTGCATTTGGCAGTAATTGAGACACGAGGCATCTTCTAGCAGCACTGAAGCAATTGGATGGTTCTGGGGCTTAGGTTTCAGGAAAGCAGCTCCCAGTTGGCGTTGAGACTCTTCCCCTCCACTGGAAAGCCCGTGTTGCATTTCACCTTTTCGTGTCTAATGCAACAACCGCTTCACTCTCGAGGGAGAAGCAGAAGCCTTCCCTGTGAGCAGTCTCGTGTATGTGTGTGGTGGGATTGTTGGCTTGATCGGATGGTGTCTTTTGTTTGCTTGTTTTTAATTCTGGCTTCCTAGAGGGCAGTAGGTGAAAGAATGAATTTTTCTTAACTGGTAGTCACTTTATACAGCACTTTGTTGATCAAACTGCTTGGATGTCATCGGTTTTTTATTTCTCATTCCAATGAGGCACTGATATGTTAATTGCTTTGGAGAAGAATGAGTGATACACAGACTGTAATTGGGGGAGACTAAGGCACACATTTGCTTAGCTTCCTAGCTCATGTGGGACTTTGTCAGAAAGAAGACAGGGAAATAACTGAAGATCCCATGTCTTTGAGAGCCACTCTTTTTCATAGGCTCTCTAAGAGTGACGTGGTGCCCTTAATCTAACTGCAGATCCCAAGAAATGTTATGTTCCAGTTCCCAGAAAACAAGTAACTTACACTGGTGCTTCTGCCTCCTTGATGCACATTCTACAAAGACAGCAAAACCATAGATGCACCCCCACCCTTACTAAAGACCTATTCCAGCTAAACAACCCTGGGACAGCCCTGGGGATCTTCATAGCACTGGGCCATGGGACATGGCCAGGATTGAGGACACTAACTCACTAACTGATCCCCAAATCAGTGGTCTGTCTACTTGAGAGCAGCTGCTGTCTGTGTTACCCATCTCTTAGGTGCACAGGCTAGAACAGTAGATTATTTCAGAGGGAGTTGAGTGCCCCTTTGCCCATAACCTACAACCTCTCCTGTGTGCCCCGGTTCCCCCTTGCCCTTGCATCAGTTGCTAGAACATCCTCTAAGTCCAGATACCTCGACAAGGTAAATGCTCCATGACAGATTGGTGATATGTAGACTTTAAGCCCCAAAAGACATCAAGGCATTCAATGCATACCGTTTTGGTTTTTATTTTCTCCTGTCCTTTGCTTTCTGGATTTTCATCTCACGTAAAGCATGTGGGGGTTTTATTTTTATATTTTTGTGTGTGTGTGCAG
Seq C2 exon
TGTCTGCCCCAAGCAAGTCTCTTGGGAGGAGGAGGCGGCGGCTGGCTCGAAACAGGTTTACCATTGATTCTGATGCCGTCTCCGCAAGCAGCCCGGAGAAAGAGTCCCAGCAGCCCCCCGGTGGTGGGGACACTGACCGATGGGTAGAGGAGCAGTTTGATCTTGCTCAGTATGAGGAGCAAGATGACATCAAGGAGACAGACATCCTCAGTGACGATGATGAGTTCTGTGAGTCCGTGAAGGGTGCCTCAGTGGACAGAGACCTGCAGGAGCGGCTTCAGGCCACCTCCATCAGTCAGCGGGAAAGAGGCCGGAAAACCCTGGATAGTCACGCGTCCCGCATGGCACAGCTCAAGAAGCAAGCTGCCCTGTCGGGGATCAATGGAGGCCTGGAGAGCGCAAGCGAGGAAGTCATTTGGGTTAGGCGTGAAGACTTTGCCCCCTCCAGGAAACTGAACACTGAGATCTGACTGCGTCACCTGCCCCGTAGAGAATGTGTGTAGATACTTCCTGCCCTAACTCTGCCCACCCTCCTGTACCGTCGACAAGAATGTCCCCTTAGGTCGCGCTCTTGCACACACGGTTTTGGCAGCTGACTTGGTTCTGAAGCCATGTAGCCACCCAACTTTGTCATTTTCAACAACATCAGAAAGAATTGATCAGAATCCCAAATAAGCTTGAGTCCTATCTTCTGTATATTACTAAGGGCTTTTATTTATTCTCAATAAATCAGGGCCTGAACAATTAAAAGAAAAAAGATTCTATAGCACTGGAAAGCAAATCACCCCAGGAGTTAACGGATGTACAACAGATTAATTTAAGGGATAGTAGCACACACACGATCCTTCTATCTGAAATCAGTCTCCTAGCTGGGGAAACCTCTTTCACACACAAAATGAAATGTGTACAGCTTGCCGTGTTCTGACTGTACCCTTCCCTCTTCCATGTCTGAGAATCTCCGTGTATTTTAAGAATGTGTGAGGAGAGGGTGGCGATTCATGTTTCAATGAGCCTCTTTTTTTTTTTCCTTCCTGTTTTGGTCTATGGCTGGTCTTACTCTGTGTCCATGTTCGGAAGCTCTAGTTTTGCATAGAATTATAGAGATGCCAAACTCTTTGAAAAGAGATCCAAATTTATCGCTTGAGAGAAAGAAAAGAAACACTATTTTTTGTATTTTACCTGAGATACAGGGGCACAAATAGATGAGAATTTTACAGTGTTAGTGTATGTATCCCTGAGCCTAAAAAATGAGGATATAACCTTTTACAGAGAGAGTGAGGCGTGGTGGTTTTATATTTATATATGAAAGGCCAGCAAGCTCATGCGAAGGATATACTTTTCTTCCAAAAAGCGGATTTTTTTTTTTTAATGTTTGAATCTATATTTGAGATGGGAGTTTGGTTGGATTAAACATGACACCCCGGTGGGCGGTGTGTGTGTCTGTTGCACATGGCAGGGAGGGGAGCCTCCTTCTCATGGGGTTGCCATGGTGATCATTGGTTTTTCCATCAAAATTGCATCTTCATCCATAGATTACCTTCCCCTTCCCTGACAGTCCATAACCAAACCTTTAAACAGAACAACCTCTTTAAAAACTTCTCTTGTGTTTAACACTTTCTTCATGCCAACGAAACAGGGTAAACATGCTCAAAACATTAACAGTCTAAACAGATATCCAAATACTAAGAAGAAAAACAAGTTATAGCACTTTCAATTTTTTTTTTTTTTTTAAAAAAAGGTTTATAGCTTTTTCTTTTCCCATGTCACAATGTCCACTTCCTAAGAAGGGTTTAAAATACTATGAAAACTTTCTTTTTGGGGAAAATATCTATTTGGTGTTTGACACATCAGTAGGTACTTTAAAGACCTGAATTTTATAGTAGCTTTAGGAGTTATATTTTATAAAAATCAGTTATGACTTTATATTTCCAGACAATAGAGAGTTCAGTACATCATGCTCTTGTGCCTCTGCCTGCTTTTCCTGCGTTCCCACCCTGTATTCCCCCCGCCTTTCGGGTTTCCAGGGCTTCGAGCTTGATCTTTTGAAAGTTTTATTCTATTAAATTTTTGCTATATCTTCTGGTTTTCTGAAAAAGCTTTAGAATGGTTTCTATACCCTTTGTATCACTGCATTTTTCCATATCATCTCCGGTTCGATCGCGTCCAGATGGAAAACGGAAGCAGAGGCTTCTAATCGTCGCATTTACTGGCTCCAGTGCAACACATCCATCTGAAAACACTCGGAAGTCTGGTGCTTGGAGAGGGTGCCATTGTCTCTTGTACATAAGGTCATGACGTGTCTATGTCAAAAGTTCTTATATATTTCTTTTATAAGCTGAAAGAAGGTCTATTTTTATGTTTTTAGGTCTATGAATGGAACGTTGTAAATGCTTGTCAAACAATAAAAATAACGAAAAGTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156299:ENST00000286827:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.139 A=NA C2=0.609
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(12.8=28.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains