Special

MmuINT0160105 @ mm10

Intron Retention

Gene
Description
T cell lymphoma invasion and metastasis 1 [Source:MGI Symbol;Acc:MGI:103306]
Coordinates
chr16:89787111-89793174:-
Coord C1 exon
chr16:89793002-89793174
Coord A exon
chr16:89789592-89793001
Coord C2 exon
chr16:89787111-89789591
Length
3410 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
ATTTTTGTGTGTGTGTGCAGTGT
3' ss Score
8.23
Exon sequences
Seq C1 exon
TTCCCCAGAGAGCAGAAAGGACTTTCTGAAGTCTGTGCATTCGATCCTGCGAGATAAACACAGAAGACAGCTCCTCAAAACGGAAAGCCTTCCGTCAGCCCAGCAGTATGTCCCCTTTGGAGGCAAGAGATTGTGTGCGCTTAAAGGCGCCAGGCCGGCCATGAGCAGGGCAG
Seq A exon
GTACTGTGGGGATTCAGACCTACAAGATCCCTGTCACCCCAGCTCCACTGTAGGTCTCCAGGGGGCAGGAGTTAGGCATGGTCTGGGGGTGGGGGGCTGATGTAAGTAGGGTCGTCTTCTGTGGTGTGAGGCTCATGCCTTGTCTCCTTCCTGATGGCTTCTTCTGGGAATCTTCCCTTCGCTTGCGGTTCCTCCCTTCCCTCAGCCTTCCCTCAGCCTTCCCTCGCTGGCTCCCCTTTGGCTGGCACGCTCCTCTCTCATTGGCCAACCCAATGCATCCTCTTTTGGAAGGGGTTCTCTTAGCCTGCTTGGGGAATGAGAGTCGCTGCTTGGCATGGCAGCCAGCTTTGTTCAGTAGAAAGCGGTGAGTTGAGGTCAGCAAGGTCATAGCCCCTCTACTGAGAACACCCGTGACTCCACAGTCTAGCGGAAGACACAGCCCGTTCTCAGCGAGGATGCGGACGTGCTCTGGCATGGCAGGCCAGTTGATGCAGAAGAAGTTGACCCTCACTTCGTGCCTGTAACTTTAGTTTCAGCCTCAGGGTTAGTTTAGGGAAGGTTTCAGCTGCTATTGGGAAAGAAGAAAGAGGAGTTTAACTGGTCCCCAGTAAATTCTCTGGAGCACTTATCCCATGTCTCTGGAGCAAAGAAGAAGGGACACCATTGCCACCACGTGCAGATGGCAATAGAGCAAGCCCGGAAGAGTGTTATTTTCCCAGTGCTGGACTTGCAGAGAGAGCCATCCACATCCTAACCCTCCTTTCCTAAGATGCAGCCCAGAATTTTTCAGGGAGGAGTCCAGTAGAATAAATTTCCTCTACACACAGGCAAACAAACAAACAAACAAACAAACCGATTTCTACTTTTGACACAGTCACCTCCCCACCAGTCCTCAGTCGTGTTGCAGAGATGCAGGAAGAGCTGTGACGTCATAGGCGTAACCTACCAACCCTGACTCGGCCTGTTACAATCCTAGGTACCTTGAGATTGACTAATGGATGTCGGTGGAGCCTACCTGAAGTCTGTTCTCCATTCAGTTGATTGAAAACCTAGAACCCAGAATCCCAGACCCCCAAACTGCAAGGCTCTCCAAACAGCCTGAGAGCCATGCATACATCCATGCCCACAGCCTCTCAGGAAGTACTCTGTAAAAACAGGCTGTTGTTTCATGGCAAGAGAGAAATTTGTTGAAGTGTTTTTTGTGCTCCTCTTGTTTGCTGAGGGGTGTTTAATCGGGAAATATGCACCAATCTCAGGGACCCTAACTACCACTGGCTCTTGCTGTTAACTTAGGAACCTAAATTCAAAAGTGCATTTACAAAAAACAAAACAAATCCAAAACACATATGCACTCACATTTTGTCCATAGGATGTACCAAAGTTTTTCTCCTGAGATGATCTTAGAAATAAAAAACAAACAAACAAACTCATTACCTGCTCTAAAGCATTACGAATGCCAAGAGAAAGCCTCAACATGACAGCCTGTTGGATTTGTATAACTGAAAGCATATTTGTTTGTTTGTTTGTTTTCCTGCCAGAGGGCTCATTTTTTGGCTGAAAAACATTTCTATCCACCCTGCCTTTGACGTAACTCACTACCATTGGAGAGTCTGTGTTCCACAATTTCCAAAATGGCGCTCCAGTGGTTCAGGCAAAGACTGCCTCTCTGAGACGGAGAGAGACCCACTAATGCCATCTGGCTTATTAAATGTCCTTTTCATAAAAGGCAGACAACTGTAACACACTCTGCATTTCACAAGACCCGTGTGCAGTCTGGAGAGCGTATAGACAGATACCCCGCCTCCATACTTACTCTAAAGTGGGACTACTTCAGCCAATAACCGACTTAAAATTTCTCATAGTCTATAATCTTTTTATGGAAAATCTGAGGCTTATGGAGCAGCTAAAAGAATCCATCCCTACATCTATATTCCATAATTAGTATTTTGCTTTATTTTCACTGCTGCCCACCCATCTGCCATCTGCGTGCACCATCTTACCTTGGCACGTTTCAGAGGGGCAGCCATGACTGCACTTGGCCCCTAAATCCCACCATGAAGACCATGCTCACGTTTCCAGTAGAGCAGTAGTGAACTGATGCCATTCAGATGTAGCGATTGAGTAGAACAAGGTTGGACTGCAGTGGGGTTAGGCTCGAAGCGAAGACGACACTTTTAGGAGAAGTAGCTTTCCATTTCCTCCCATGTTGCCTGGAGTTTCTTTCTATTGTGCGGTGCCCATCTGGTCTGTGTGTGGAGATAATGGGACTCTCAGAACCTGGACAGTAGGTGTCTCCTGGCAATGCTGAAGCAGCCTCGCTGCTTTTGAGACTTGGGTTCCAGGACAGCTGCTCCTGACTGGTGTGTGCGTTGCTCCCTCCATGGAAAAAGCCTGTGTTGCATTTCACCTCAGAGTGTCCGATGCAACAGTTACTTCGGCCTCCGGGGAGAAGTGGCATTGTTTCCACCAGAGCCATTGCGTGCGTGCGTTCTTGCGTGCGTGCGTGCGGCGAGTGGTGGGAGCATTCATTGCTTGATTGATTGGAATCTCTATTTGTTTGCTTGCCTTTAGTAATCCTGGCTTCCTGGAGGGCAGTGGGGTAAATGAATAAACCCCAATATTTTACCTTGGAGTAACTTTCTGTGGCGCACTGTTCCTCAGTGCTAGAGTGGCATCTGTTATTTCTCTTACGCCACTCAGGCACACTGTAGTTTTAATTGCACTGTAGAAGAGTTGGCGATTCACAGCTTGGAGTTAGTTAGGACTATGGCTCTGCTTAGCCTCAGAGGTCATGTTGGACCTTATCAGAAAGGGTACAAAGAGTGGACTGGAAGGGCAGTGTCTCTGACAACTGACATCCAGTCTCCAAGAATGTGATGCCCTCAATCTAACTGTGGGTGCTTACGTCCCTGGAAAGCACTGTCCACAGCACAGTGCTCCAGAGAGCACAGCAATGCTTCACAGCAAAACCCCTGAAGGCTTCTCTCAGGCTTATCAAACACCTCTCTCCTGGCTACGTGACCCTCGGATAACCCTGGGGTAAGCTCTCTAGCTCTGTGCCGTGGGCACAGTCGTGTTGAGGACAGTCTCTGGCCCAATGCTGAGAACAGTAGACATCTGTGTTTCCTGTCATGTGGGTACACGGGTTAAAGTAGATTATTTCTTTCTCCATAACCCAGAGCCTCTAGTGTTTAGACCCTCACTCCTCACTTAGTCTCTGGGCCCGTCCTTAGATCTGAAGATCCCTTCAGATGTCTGAGCAAAGTAGACACCACTGGGACAGTAAGGGGTAGACCCCAAACTCCTGAAGCCCCATTCACCTTTTATGCTTCTTTTCTTTGCTTGCTGGGTTTTCATCTCACAGTAAAGCATGTGGGGGTTTATTTTTATATTTTTGTGTGTGTGTGCAG
Seq C2 exon
TGTCTGCCCCAAGCAAGTCTCTTGGGAGGAGGAGGCGGCGACTGGCCCGAAACAGGTTTACCATCGATTCAGACGCCATCTCAGCCAGCAGCCCGGAGAAAGAGCCCCAGCAGCCCGCCGGTGGTGGGGACACTGACCGATGGGTAGAGGAACAGTTCGATCTTGCTCAGTACGAGGAGCAGGATGACATCAAGGAGACAGACATCCTCAGTGACGATGACGAATTCTGTGAGTCCCTGAAGGGCGCCTCAGTGGACAGAGACCTTCAGGAGCAGCTTCAGGCTGCCTCCATCAGTCAGCGGGCCCGAGGCCGGAGAACCCTCGATAGCCACGCCTCCCGCATGACACAGCTCAAGAAGCAAGCGGCCCTCTCGGGCATCAACGGGGGCCTGGAGAGTGCGAGCGAGGAAGTCATTTGGGTCAGGCGCGAAGACTTTGCCCCCTCCAGGAAACTGAACACGGAGATATGACTTCCTTGTCCCTGTAGAGAATATGTGTGTAGATATGATGCCGGCCCCACCCTCACTCCGCCCACCCTCCTGTGCCGTCCACGAGAATGTCCCCTTAGGTCGCACTCTTGACACAGATTTTGGCAGCTGACTTGGGTCTGAAGCCATGTAGCCACCCACCTTCATCATTCTTAATGACACCAGAGAGAATCGTTCAGAATCCCAGACAAACAAGCTTGAGTCCTTTCCTCTGTGCCAAGGGCTTTCTTTTATTTATTCTCAATTCATCGGGGCCTGAAGATTTAGAACGAAGAACCGATAGCGCTAGAAATCAAACCGTCCCCACCCCAGCAGTCAAAACAGGGACAGGACGGTGTGCACAGATTGTCCCAGCTCCACCTCTCTAAATCCAGTCTCGCAGCTGAGGAACAACCACCTTCAAACACACATAGAGAAACGGAACAGATGGAAACACCTGTACAGCGTGCAGTGTTCTGACTCCTCCCCTCTTCAGCGTCCGAGAATATCTGTGTATCTTAAGAATGTGTGAGGAAAGGGTGGTCGTCTCTGTACGATGAGCCTTTATTCTTATTTTTTTTTTCTTCTGTTCATGTCTATAGCTGGTCTTACTCTGTGTCAGTGTCTGGAAGCTCTAGTTTTGCAGAGAATTATAAAGATGCCAAACTCTTGGAAAAGAGATCCAAATTTATCACTTAGAGGGAGAGAGAAGAAAAAAAAGAAACACTATTTTTTGTATTTTCCTTGAGATGCAGGGGCACAAATAGATGAGAATTTTACAGTGTTAGGTGTAACTCAGTCTGAAAATGAGGATATAACCTTTTGCAGAGCAAGCGGGGCACGATGACTTTATATTTATACACAAACGGCCAACAAGAAGCTCATGCTAAGAATAAACTTTTCTGAGAAACAGATTTTTTTTTTAAATGTATGAATCTATATTTGAGATGGGAGTTTGGTTGGATTACAGGGACAGGAAATGGGGCAGTGTGTGCGTGTGTCTGTTGTTCATGGTGGGGGAGGGGAGCCTCCTCATGGGGTTGCCATGGCAATCATTGGTTTTCCCATCAAACTTGCATCTTCATCCACAGATGACCTCCCCTTCCCTGAGAGTCCACGGCAGAATCTTAGAACCTCTTCAGAGACGTCCTTTGTGGTTAATATTTCCTCCATGCCAATGAGACAGGGTAAACTCGCTACGGGGCCTAACCTTCTAAATGGATGTCCAGACAGGAAGAACAAAACCCATTCTAGCACTTTCATTTTTAAAAAAAAAAAGGTTTATAGCTTTTTGTTCCGCCCTCCTCCTCCCCATTTCACAATGTCCATTCCTTAAGAAGGGTTTAAATAATATGAAAACTTTGTTTTTGGAAATAAAAAAATATCTATATATCTATATATCTATATATCTATTTGGTGTTTGATACATCGGTAGGTACTTTAAAGACCTGAATTTTATAGTAGCTTTAGCAATTATATTTTATAAGAATCAGTTATGACTTTATATTTCCAGATAGAGAGTTCAGAACACCATGCTCTAAAGCCTCCCCCACCCCGGCTTGCTTTCCTGCTTTCCTGACCTCTCTCCCCCCCCCCCCTTTCGGGTTTCCAGGGCTTTGAGCTTGATCTTTTGAAAGTTTTATTCTATTACAGTTTTTGCTATTACCTTCTGGTTTTCTTAAGAAGCTTTAGAGTGGTTTCTATGCCCTTTGTACCACTGCACTGTTCGTAACATCTCGGGGTCGATTGCGTCCGGATGGGAAACTGAAGCAGAGGTGTCGGATAGTCACATTTTCTGGTCTCCCTGCAACACGTCCATCGGAAAAAAAAATACTGGAAAGTCTGGTGCTTAGAGAGGGTGCCATTGTCTCTTGTATATACGGTCATGATGTGTCTATGTCAAAAGTTCTTATATATTTCTTTTATAAGCTGAAAGAAGGTCTATTTTTATGTTTTTAGGTCTATGAATGGAACGTTGTAAATGCCTGTCCAACAATAAAAGTACTGAAAAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002489:ENSMUST00000114124:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact

Alternative protein isoforms

No structure available
Features
Disorder rate (Iupred):
  C1=0.114 A=NA C2=0.571
Domain overlap (PFAM):

C1:
PF0016924=PH=PD(12.8=28.8)
A:
NA
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:


Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
ALTERNATIVE
Chicken
(galGal3)
ALTERNATIVE
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types