GgaINT0120879 @ galGal3
Intron Retention
Gene
ENSGALG00000008461 | F1P302_CHICK
Description
NA
Coordinates
chr1:11442981-11449635:+
Coord C1 exon
chr1:11442981-11443108
Coord A exon
chr1:11443109-11449552
Coord C2 exon
chr1:11449553-11449635
Length
6444 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
3' ss Seq
GTTCACTTTTTGCATTCTAGCCA
3' ss Score
6.64
Exon sequences
Seq C1 exon
CTTCCGAGGAGCCATCTCCTCCCCGCTAGCCGCCGGGGGGGCCGCCAGCACCATGTGGGCTACCCAACTCCTGCCAGCCTTGCTACTCCATCAGCTGCTGCTGCCTCCCATCACCATCCCTGCGGCAG
Seq A exon
GTTAGTTCTTCTATCACTTCTCTAGCGACACCCCCCACCCCTCCCCAGCTCACAGCTGCATCGTTCCTCTCTCTCCCTCTCTCTGCCCGGCGCCCCTCAGCAATACCTCCGCTGCACCAGCACCGGGCGCGGCTCGGGGTGAGGTGCTGGGTGCCGGTGCCCATCCCCGGTCGTCTCGGGACAACCTGTGCTCGGCGGGGACAAGCTGGGTGGTGTCGAAGTGTTGCTGCTGCTTCCATCACCTCCCCTCCCGGTGAGGGGCACTCGGGAGTCTCTCAGGACATAGAGATCGGAGAGTGGGAGGAGGACGTTTCATCGCTGCCTATAGTCAGGGTATGAGGAAACATCTGCCTATAATTTCCGAGTACTAGGATAAATGTTAATTTAAATAAATTGACAAGGAATACCCAAAGCATAAGATAGTATGCTGAAAGGGGAAGCCCTTGCTAGAGTTCAGCAGCGCAAACGTGCTATTTCCAGACTGAAGTAGTTGTAATTTCATTAGACGTTCCCGATGAAATCCAGGAGCGGAGGGGGGGGCGAGTGAGGGGGGAAGAAACAAACAATAAGTAATCAAGTGCTGGAAGCTTTTTAGCTGAATTTCTTTCCTGAAGTGTCCCCCTTGGACTGGATATCTGGAGAGCTAACTCTGTGTTTCTATTGGCCCTCTGGGGAGATGTTTGAGGAAGAAAGTTTGCAAAGGTTTCTACAAACCTTTCCTTCCTTCCTTCCACCAATATTGTTAGGGTCAGACCTTTGCACAGACAGAAACAAAAGGCAGCCAGAATTCAGGGAAAGGATCTGCCAGGAGTAAGCAGAGCGAAAGCAGGCACATGCAGTGTCTGGGTTCAGGGGCAAGGCTTGAGGGTACCAAGCAACGGGTATGGCAAGCGATGTCAGTGGCTTCCAAGGTATGATTAGATTTTCTAGTTTAAAAATAATTAATTAAACAAATACATATTTTGAAGTAGTGTTTTAAAGTGGAATAGTTTGTGATTTGAGTTTGCAAGTCCAATGCCATTTTTTCCCCTATAGTAAGAGTTCTCTTGGGTGCTGAACATCTCACGAGAGCTTCTGTGTTCAGTCTGCTCAATGCTGATTCTGTTTTCATAGGCACTAGAAGCAGGTGAAACAGAGATGCAGCCACTATTCTACTACATTTTTCCGAACTCCTTTTCCACATACATTGCAATTTCCATTCTATAGACATGTGACCTTTCAGAAAATTTGATGACTAGAGCTAGTTAGGATTTTTCTGAGAAAATATTGTGGTGGTTTTTTTACTGGAAAATGCTGACCCATCAAAACTTTTTCTTTTAGGCAGAAAATTTCTTTGGCCTAGCTCCCTCATATCAAATGAAAGAGAAATTTGCATCAAGAAACGTTCACAGTAGCTTGGAGTACCTGTTGGTGAGCAGTTCTCACCTAGGATAGAAACTCATCAACTGATGAGTTTGAAAAATAGCAGAACAGCCTCGTGCAACTTCCTTTGGCCAACCAGACAGAAACTGGTGTATAGTATAGCCAATTTCATAAGAAGCTAGGTTGTTCTTAATCCCTTGATGACTAGGACTCTTTCCATGAAAGAGTCCTTGTACAGCCTGGTTGTAGTCACGTCTGTATTTCCCCAAGCTCAAGCTAATATTCAAAAGGAGGAGATTGAGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCCTGGTTGTAGTCACATCTGTATTTTCCCAAGCTCATTCTACCATTCTAATGGAGGAGATTGAGAAATTGATACTATGAGTATCAGTAGACTGATTATTATGGTTGTAACCTAACCAATGGACTCTTCAGTTTAGTGCATGGTTCATCCTGATGTGGAGGGAAATTAGATTTCCTAAACTTAGGAATTTTTCTTTGAGTAGAACTTGTTTTCTGGCCAACTTTCATAGTGACAGTTTTTTTGCAACACTCCCTTCCTTAAATTTCCTCCCCACCTACCTTAATATTAATCAATCCTATTGTTTGTTTTCTGGACAAGAAAGATGACTCTTACCACGCACTGCCATTGTAGTTACCTTAGTTTGTAAAAATAGGTGATCATCAGCAAATGTTCCAGGATTTTACAATGTAAGGAAGGGGAAGGGTTTTGAATTATTTTTACTGAAAAGGTTTTCAAGAAAGGTTAATATATATGCCTATGTATTTATTATTTTTATATATGAAAAAGCTAAGTGATGAAAATAATCAATATATATATATATATATATAAGAAGTATTTTGCTAATGCATACCCATACTTTTTTTTTTATTAATGTTCTGTCAAAGTTGAGTTTAAATTTACCTAATAATGAGTCTTATTTATTTTGTGACTGGATCTTTTAGGTTTGGGCTCCAGTGTCTTAAGTTCTGTGTGAAGACAATGTCCTGTGTAACTGAGTTTTCTTACCATTATATGTGTAGCTATTTTAACGTGTTTAAAAAAAAAAAAAAAGAGAGAGTGAAGAAACTTTCCTGCTAGCAAGCTGTCCATCCCATCAGTTTTGAGTTTCTTTATAATATGTAAAAGAGAAGAAACTGATTGGTAAAAGTGATAAACATACAAGATTCCTATAGACTACTTTCCTAGTCATTTTCAACATCCTGTAAGTTTCTATCACTTGCAGAAAAAAATTAATCTGAAGCTAGTAACTTTATCAGAGTTTTCTTCTTCACTCAGACATTCTTAATATTCATTTTTCCTAGTATTTCTTTAATAATGTTAATCTATTGAAACTGAGGCTGGATATGTAATGAAACCAGATTGGTATATTGCAGAAGAATGAATGCTAAAGATTAATGTAAATTAAAGATATTTTCTGCAGAAGACTGGCATCTGAGTGTTTCTTTACCATTATTTCTCAGCACTTTCTGTAGTTCAGATCATTTGAAAAGTTTCTAATGAAGATGTGGGAGTTGCACTTAGTTCCTATAAATAACTGTTGCTTCAAAAAATCCCATACCAATAATCGATATATGAAAGTTGTGTATTCCTGTGGTCTGCTTAGCTACATACATTTTAAAGTTTAATGTGATTTATACTTCCCCACCCCAGCTGTAGATAGTCATTATTCTATATACTGTCAACAAAGCCAAATGCTACTCTGCCAGTTGGAAGACTGTATTCCTTCTGTTTAATGGAATCCTTTTGGTGCTCAGTGCCAGGGGCTGCTTGTTTTGCTCTCGCATGTAATACGCTCTTACCCTGCTTAACAGATTTTCTGTTTCTATTAATGCCATTTTCATAAGCAACCTAGCAGGCGAACTTAGAGTTGAAAGACATGAGATTAAAATGTTGCATAAAACTCTGGAAAATCGTGCACTGAAGTCAAGAGAAAGGAAAGCCTCTTATTGGAGGAGTTCATCTGTCATTATTGTAATACTTCAACTGAGGCCAGGGTTGGAAGGGAAATTCACAGACTCCCTCAGAGAGCATAATATCTCCCTTTTGGATCTTTACACTGAACATTAGTTTGCCACTTAAGCATTTCAAACTTTTCTAAGGAGATTTGAAGGCAGGAAAACTGGGCCTCTTGGTAAAAGGAGTAAAAGCTGAGAGATGGGTAAAAGCTTTATTCTGTTGGAGGAAGACAGTTGCCCTGAACTTTTTGCAATTGCATGTAGTGAATGAGTACTGGAATTTCACTTTCTCCCATTAGTCTTGAGGTGGGGGGTAGAAGGGTAGAAGCTACAAGGAGCATGGAGATGAGAAAGAATTGATTTCCACACTTGCTTGGAAAGCTGGAATAGTAGAATTGGCATCCTCCAGATGTGAGCAAAGTTTGTACACTGCAGTAAGAAATTAGGGTAGCTACAAAGCATCCTGAAGGGGTGAGGATATCCTTAATTTTCCCTCATCTCTTTTCCATGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCAGTCCCATTAGAGGATAGTAGAACTATTCCTGTATGTGATTAGTACCCACATGTAAAGCAGTGTTGCAGTGAAGCAGAGCTAGGAACATGCTCCATATTAGTCAGATGTTCTGGCAAAATCTAGCTACAGGAGATGGAGCTAAATGAACTGTGGGCCTCCACCCATGTGCTGCCTGATGTGCCTGGCCATGCCTGGCAGTCCTCAGTGCTGCTGGCACAGCGTGAGACTAGCTGCTCCATCCATCTCCCATCAGCTCCAGCTCTTCCTATGACTCCTTACTTTGGCCAGCAGCATGTTTTTTATGTATACAACATGTAGCAAGGCTCTTGTCACTCCTCATACAGGTCCATCTTTGTTTTGACTAAATCACTGTCCTGTCTGCTTGTGCTTTTCTTTTTACTCTCCCCTCCAAACCCAGGCACGTTAAGTTGTTGCTGAGACCCCACTGCAAATGGAGCACACAATGCGCAGGGTGCCTTGGAAAAAAGCATCACATATTTGTAAAGATTGTGGAATGCCATGCGAAATAGAAGGGATTTAATTCTTGTGCAGATGCATAAGAAGAAAAATCTTACAAGGGAAAAAGTTCTCTGTAATTTAGCCAGAGGTTAGATACAGCAAGTCACAGTACAAACTGCAGACCGTTTGTTTCTGCCAATGGGTCTCAGCATCCTGCTGTGCAGATAACCTTTTCCTGGAAAAGAAAGAGCTGTCCTTTTGCATCTACCATCCAATTATAGAACATGCTATCAGTTCTTAGCATTATCCTTTGTTTCTTGAGTTTTCATGCTGACTATAGGAGAGTTACAAAGGATGGACTTATTGAAAACTTGAAGTTGGGTTCCAAACAAAATGACAATCTTTGCAGCTGCTAATGAGGGATATGTGTGCATGGGTGTGTATGTGCATGTGGGCGTGTGACTGAGTGGTAATATGCAACATAAAGCCAAAAAGAAATATATTCTTTGCATTTCCTGAATCTGTTCAACAACTAGACTGAAAGCCAATATAAAAATAAGGAAAAAATTATCTCTATATTGTATATTGCAAACTGCTTTCTAAAAATTGCAGATTTTTTTTTTTTTCTGTGATGGCTTTTTTGCCAAGAAAATAAATTTCAGAAGTTAAGAATAATCACATGATTCTCCAGATACCTTTCTGAGAAACTATTTAATTGCAACAAGCAAGAGATGACTCTTTGGACAGCTGGTTTTATTTTGGTGACATTCCATCTGTATAGCTGACTGCAGTTCTTATGTGTATGGTTGATAAACTTTTTCATGCAAAATTATTGTTTTACATAAATAACCACATTAAACTTAATCTAGCTTCTAAATCTATTCAAAATAAAAAGTTATTTTTTGGGCACATTTCAGAATTGTTTCAGTTTTTCATTATGTCTTTCTTTCCTTCTTTCTTCTTTCATTCTTTCTTTTTCCTTCTTTCCTTCTTTCTTTTTCCTTCTTTATAGCCAACCTTCCTTCCTTCCATGCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTGAATCCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTCCCTTCCTCCCTTCCTCCCTTCCTCCCTTCCTCCCTTCCTCCCTCCCTTCCTCCCTCCCTTCCTCCCTCCCTTCCTCTCTCTCTCTTGCATGCTTGCTTCTTCTCTTCTTTGCTTGCTTCCTTTCTGTCTCTCTTTCTATCTCTTTTTTTCTTTCCTTCCAAATGAGAAGTCATTTGGAAAAGATGTTCACTTTTTGCATTCTAG
Seq C2 exon
CCAGGAAATTGGACATTTCTGATACTGAAACATGCATAAGGAGAAGTCAAAATAAATGAAAGCAAGTTGAAACTAAGTTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008461:ENSGALT00000039793:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.158
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]