HsaINT0075903 @ hg38
Intron Retention
Gene
ENSG00000019991 | HGF
Description
hepatocyte growth factor [Source:HGNC Symbol;Acc:HGNC:4893]
Coordinates
chr7:81762707-81770198:-
Coord C1 exon
chr7:81769884-81770198
Coord A exon
chr7:81762873-81769883
Coord C2 exon
chr7:81762707-81762872
Length
7011 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
3' ss Seq
AAACATTTTGTATTTAATAGAGG
3' ss Score
4.38
Exon sequences
Seq C1 exon
GAGGAAAGGAGGGGGCTGGAAGAGAGTAAAGGGCTGTTGTTAAACAGTTTCTTACCGTAAGAGGGAGTTCAGACCTAGATCTTTCCAGTTAATCACACAACAAACTTAGCTCATCGCAATAAAAAGCAGCTCAGAGCCGACTGGCTCTTTTAGGCACTGACTCCGAACAGGATTCTTTCACCCAGGCATCTCCTCCAGAGGGATCCGCCAGCCCGTCCAGCAGCACCATGTGGGTGACCAAACTCCTGCCAGCCCTGCTGCTGCAGCATGTCCTCCTGCATCTCCTCCTGCTCCCCATCGCCATCCCCTATGCAG
Seq A exon
GTTAGTTCCCTTCTTCTTCTTCATTATTAGTATTAGTATTTAACTCTCCTGCTAACCTTCCCTATTCCTTTTAACACCCTCTTTTTACCCTATTCCCAGCATCCTTTCTGAACTCAGTATGTAGTATAGGTTTCTAAAAGCTCTCATTATGCTTTTTTTGACATTCTTTTTTGTTGTTGTTTGAATAGCATTTAAAATGATAATTAACTTTCCCTCAACTCCCCTCCACCTCCAACCCAAGCCCCGTCCCACTTAGCCTAATAGTTGTGGATTATGAGATAGGGAGGAAGTGCTAATACTGGCTGAACTTGGCTGCTTTGGACAAGTTTAAAGCTAAAGAGAGGGTCTGGTCTGAAGAGGCAAGAGTGATGGTCAGTCCGGCAGGAAGTCATCCTTTTCCAGAGAACAATTTTTCATGATAATGCACTACTCCACATCACCTAGTCAACATTTGGAGCCAAATTACGACTTTGTACAGGTTTTCATTTTGAGGAGGCAGAATAAACTCTGAGTATTTGCATATCATAAAAATGAAAGAGAAAGCCTCTTTTTAAAGATCTTATTCTTTCTGGGTACGGATGCCTGCCCTTTGAAACTGCAGTGCACGGAGACTTTGATTAAAGCTGCAGAACTGCCCATCTCTGTCTCCCACTTTCTCCCTTGGATTTGCCGTTTGGGGAGGAGTTGCTTGAAAGTTCATATTGCTTGGAGATTTAGAGATCTCGTTTGCTGCTCTGGGAAGTTTCTCTTGTTATCAGGGCAAGAGGAAACATCTGTATTTTGTTGTATCATTGTAGAGGCTGAGGTGCCAACGGGAGAAGGCAGTGAATATCAAGGGTAGGCGCAGGGGAATAAAAGAGTGGGAACAAATGCCCAGATGGAGACATGGCCTTTTTACAATATAAAAAAGAGAACTGGCTGTATCTTTTGAGATGGTAAATATGACATTTATCAGACCTTTGATCTAGTTTTTGATATGGTACAAGGGTTAAAAAACTCAAGAATTTTCTAAATGCAAAGGAAAATCATTCAACCCACCTGGTTTTCTTTTATTTTGTGAAGTGGCCCGTTTGGAAAATGACACTGTTTGGAAAGGGTCACTCTGAAAGCATTTAGGTAAGATTTCTGAAGAAGTGAAAAAGCAGTGAGTTCAAATCAAGCAGGTTATCATGCTTGACATGTGTCATGTTAAAATCGCTTCACAGGGTCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATTGAGACCATCCTAGCTAACAAGGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTGGCAGGCACCTGTAGTCCCACCTACTTGGGAGGCTGAGGCAGGAGACTCTCTTGAACCTGGGAGGTGGGGGTTGCAGTGAGCCGAGATTGTGTCACCGCACTTCAGCCTGGGGAACGGAGCAAGACTCCATCTCAAGAAGAAGAAGAAAAAAATGCTTCACAGATGACTGCTGGTTTAGGGGATTTTGAGCTTAAATTGAAATAATGGCTAATATTTTGAGGGTTTTCATTTTTAAAGATTAAAATGTCACTGTTCTTAAGTAGAATCTGGTTACCTGAATTCATCTGTGCTAACGCAAGGGGAACGCAGTGTGGAAAACCCAAACAGTAGATCAACCGTAGGCAGTGTCTATTTGTTTTCGGCATGCATTATGAACTTTTGGCAGGAGACATACATTTGTAATTATATTTCACTTTGCCTAATGTAGAAATGACTGTGTTTCCTGAGTACAGGCAGAATGCAGCCCAAGAGTGCTGGCAGGCAAGGAGAGTCCAGTTGGGAATTACAAATATGCTGTGAATAATTCCTGAAGTGGATAATTCTAAAATTGTCATCAAAGGAGGGTGCGCCTTTGTTTAGATGGCCAGTTTGATAGTTTTTTTTAATAACCTTTAAAATAAAAAATATGGGTAGCCTCTTAGAACACACAAAGTTTGTTCTTTTTTAAATGACATTTAATATTGACTATTTAGAGGTTTCTTTTGTTGTTACTAGCTTTGATTATAATTATTTATTCTATGAATTTATATTTGTATGTATTGTAAAATAACACATTGTTAGGAAAGAAGTATATACTGTAAGTTGACAACCAGTTATCAACAGAATACACTATGGAGATACTTTTTTAAAAGCTTAAGAAATATTCAATATAATGGGCCCCCGCCATCTTTGTAGGAGTTAGCCTATATAGAATTACCCTCTATTCACTCCCACCTACATGGGAAACAAATATCCAATCCTCTGTAATAAAAGAAGCATTAAATGAGCACCTAATATTCAAGAGTATGTGGGGGATGTAAAGATGAACAAATAAGAAAGGAACTTAAATTTGTTGAGCAACTGATATGAACCAAGTAGTAAAGTACATCTCACTTAATTCTAATAAGATTGGCACTATTGGACTCATTTAGCCGGTTCAAAGACCTCAGTTATCTTATTTCTTTGTGAGTTAAGGGACAGAGCTGAGATTTCTACCCAAATGTATGTGAATGAACTATGTGGTGTTTTTTTTTTTTCTTTTTTCATTTATATTGAAGCGAGCAGCAGTGAAATCAACTGAAATTTACTTAAAAAAAATCATTTGGCCAAGTGATATATTTTCAAAAAACCCTGTTAGAAATACTTTGTACTATGGTTGAGAGTTCATTTTCAGCATAGAGAATCAAACCAGGTGAAGGGGTTATATGGTACTGAAGTCCATATGAAAAGATGGATGGTAGAATAGTCAGTATCTTAGCACAGGATCACAAGTGGCCCAAGGTACAGAGGTTCGTAAGTATAAGGAATGTCCCAGGAAGGACCCCACACAGCAACTGAAGGCAAGCATTTGAGGCAGAAGTATTGGGCATGTGATGGGGAATATTGTCTGTGAGTGGAAAAGTAAGATGAGGTAGAATGGATAGGATTGAAGGTCATGCTCAACCATGTGGTCTTTAAAATGAATGTCATGCGAGCAGCTGAAAGTTTTTTTGTTGAAAATGTACTTGATTGAAGTTGTTCTTCAGTGTGGTTGCTTCAGTTCCTGTGTGGAAGGAAAGTTGTAGGCAGAAACAGACAGTGAAGGTGGAGGCCAGGATGAGGCTTCTAGAAGAATGAAACCTTAAATAAGAACTGGAAAGGAGAAGGAAGAAAATACCTAGGGAGGCCCCTCAAATCACACTGAACATCACTTCATTTTGTAAATCCCCTTGGAAGAGATGATGCTGCAGCTTCTCAAATATCAGCATTTGATTTACATCTGACACAGTCTCTGTCTTCTTGGTATCTTTATTTGTGATATTGTTGCCTTCTCTAAAGAAAGGGAGATGACTGCCGATTTGCAAAAATCCATGTCTTAGATAATAACAACGAAAATTTAGACTTCTATTTGAAATTCTTGGCTTTGGAGAGTTTACAATCTCCAGTCTCAACCATTCCCTTCCATTAATTATTTGTGTACTTTCATCTTAACATCTTGCCACTTGAATCTCTTCATCACTAATCATGTGGATAGGTTTCTCAGAATATGTGGAGCCAGATTCCTGCTTCTTTCCACACCCTGCAAATCCTTTCCTTGCATGATTTTCCTTTGAAGTCAATGGTTAGTCCACACAGAGAAGAAAATATATGAGGTACTGAGAGAAATGAGTGTGAGGTGCCGGGACCAGAGGGAGAAATGTGTCTTTCTTCAAGCACCTTGATACATTTGACCCTACTTTCTGTGTGTAGGTTTTCACTAGGATCCTAATGATTTCAGCTCTAAAACAGGGACTTCAGGTTCTTCAGGAAATATAGCTTCCAGAATGTTTTCCCATACTGGGAGAAGAGGAAAAAGGAGTTGTAATTTAAAGCACAGGAAAGCATGACAAATTTGTAGTGATCTCTCACCCTTTGATTTCATTTCAATATTTTGTTTATAAACTTCAGCTAACAGTCACGCACAAAAAATAGTAGGGAAAAATCTGATCCAAAGATATTTTTGAGTTTCTTCCCAAATTAAGCTTGGCTTTTAACTGTTTTCAGTAAAACAAGCATCAGTTGTTAATACATATGGAGGAGAAAGTTGAAACTATTTTCAGCAAAGGAATTTTATTTTCAGATGCTGTTTTTGAATGACTTCTGTTTTGAATTTTTCTTTTATTGTATAAGGAATTAATTTTATAGATGTGTGGATTACATGATGTACAATTAGCTCCAACTTCATATTTTTGAGTAATTAGTTACTGGCTTAGTATAAATGACTTAATTAAAAGGGAAAGTTTCTATGTCATGAGAACAAAATAGTGAGAAGAGAATTCTGGTGTCTGGTTCTGATTGCCCCTGATAGCTTTGTAGCCCCAGACAAGCTTTTCATTTCTATTTGTTATCTAGTAAAGGGAAATAATAGATTTATTTGTTTTTCAAAATGCTTTTCGATCTTTAGATGAAAGGTAGTGATTGGAAAATTTGTCAGCAAGCAAGGGTAGACTGTTTTTGTGAGGTACAACAAAACATTAACACATTTCAGTAGGACAATTGAGGAGATTTAGAATTAAATACAATCAAAAATTCCACGGAGACCTCTGCTCTCCAGAATCTTCTTCATGGCTTGCCTTCATTTTGCGTGGCATTGAGAAAAGAAACCAGAGCATTGACCAGAGATTTTGTTTCATTTGATACATTAAAATACATTACACATTTAATATTTGTCTTAGACTTTTTGATTTTTAGGCTTTTCCCTCACACTTAGACATGTATACTAAATAGATTATATATCAGGCCAACTTCAATTTTATATTTTTAGTTAATATAATTATACACATATTTAAGAAATACGTGTATAAAACTCTTCTATTTTGGTGAATAGTTGTTTCATAGATTTTTTTCATCAATTAACTATCATTTATTTCTAAGAAACATTCAAATTTATACAGGAAATTATAAAACTATTATGCTATGAAGCATTTCAAAGCACCTTAGAAATAGTGTAATAAGGTCAAAGGAAAGAGAAACTCTTAATGGAAAAACTTATCTCCTATTAACATGGTTCTGTGACAGAAATCAAAATTTGAAATGAATTATGCCTTCTTTGCTTGGAAGAATCACAGTTTCTTCTTCATGCCAGAGATTAAAGGATAAAATTTCAAAAACAAAACTAAAACTTTGCGTATTTATAACATTTTTAAAAATCCAAATTGATTTTCAAATATTTACTTAATGGTTACAGTTTAATGTTAACATAACTTTTATATTTTAGATTGAGAAATTGGGATGTTAACATTTCAGGTAATTAAAAAGTCATTTGACAAGTCAATAAGATTGCCAGTGTTGTACAAGGCATTTGGTCCATGCTCAATAAATAACATGTTGACAGATTTTTGGTTGATTTCATTTTCATGTTAAAATGTCTTTTAAACTGTATCTGTTGTACCATAGCCATTCTATCCTGTAAGGCAAAGCAAAATTAAAAATGAAAGCATCATTGCAGGAATTAGTATTGTCTTTTGGAGATTGTGCTTTGGAGTTTTACAGAGATTCAGAAATTTAGAGGACCTCGTGTTTTCTCTAATTTATTGCAGCCTTCAAATTAGGATGGACACTAATTAGTAGCATCTGCTCATCTCATAAACCAACTGGAGCCAGTGGTTGCTGACAAACTTAGAGTATGATGGCATTTTTGGTACCTCACTCTGCTAGTTGTATTTCCAAATTTTGTGCACACAAATTTTTACTCTCCTTTTTTGACACATTTCAACACAGATTCAGATCAGGAATGTATTTCCTGCTCTACTATCCACATTTCTTCTCTACTGCTAGCTCTAAACCAAATTTTCAGGAAAGTGTTACATGCCATATTTCCACTACAATCTTAGCCATTCTTAGCTACAGATGGCATGGTCAGTGGTTCAGAGTGGTGGTTTTTAAGTCAGCCTGCTGGGTTTCCAATCTGAGATCTTCTAAGTGGTCAATTAATTTTTTTCTATGTCTTGGTTTCTTTGGCTGAAAAATGAATGTATCCTTACTGCCTTTGGTATAAGCATGTTTGAAAAGAATTGACAGGCAGAGGGGCACAAGCACATCTATCCTTATTACACAATAGCTGCACTCTATTAAACATTTTGATCTGCATTGTGAAGATGCTGATCACTAACAGATTGGGGCTATTTTGGGCAAATTGAGAATACAGAGAACAAGTTTTTGAAACACTAAAGTTATCCATAAGATTAGGTCTTTTAGAATGTTTTAGTTCTGTTTTTCAGATTTTCAGTAGAAGGCTTCATGCTATCTAGGCGCCTTGTATTTTCATGAAGAAAAATGATATTGCTGCATTAAAGGATGAAGTTTTACATACATTTGATTTACAGCATTTGGCTTGATCTCAAGACAAATAGTTCGGTGATACCAAGAAATAGTGTCCAAAAGCACAGAAAACATTTATGCACTAAAGGAGGAGAGAGGGGCTAAAATATGAATAACATGAAAGACTTTAAAGAGTAGGTCAGAAGAATTTGTCCACTGTACAGTTTTTAGTGAGACGTTTCTCGCCTGTCTTTGTGTTGGCTTATCTCATTAAATACTATAACGTATATGAGGACCAATTGTAGAAGGAAATGAAAAGTTTAATTATAAAGCATGATATGATATGCTTCTAGCACTGATATTTCCTTTCATGATGTTTGGAAAATATCATGTTATTTATTTCTTTAGTGTGAACTCTGTCCTGATTTTTAAAAGCTCCTTAATTTGAAAGAATGTAAATGAGTGACTCTACATGACAAGTTATTTGTTTTTCCTTGATTACAATATTCCTCTCTTTCTCTTAACTATTCCCTACCTCACTCTGCTCCTAACCCCTGGAAATCTAGTATATTGTCAAGTAAAATCACTTTCTTGTAGATGATCCTTAGGATTTTTTTTATATATGAGCCTTAAAAACATTTCTCCAATGTTTATTTTTTTAAAACATTTTGTATTTAATAG
Seq C2 exon
AGGGACAAAGGAAAAGAAGAAATACAATTCATGAATTCAAAAAATCAGCAAAGACTACCCTAATCAAAATAGATCCAGCACTGAAGATAAAAACCAAAAAAGTGAATACTGCAGACCAATGTGCTAATAGATGTACTAGGAATAAAGGACTTCCATTCACTTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000019991:ENST00000222390:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.018
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0002421=PAN_1=PU(52.9=80.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development