HsaINT0075903 @ hg19
Intron Retention
Gene
ENSG00000019991 | HGF
Description
hepatocyte growth factor (hepapoietin A; scatter factor) [Source:HGNC Symbol;Acc:4893]
Coordinates
chr7:81392023-81399452:-
Coord C1 exon
chr7:81399200-81399452
Coord A exon
chr7:81392189-81399199
Coord C2 exon
chr7:81392023-81392188
Length
7011 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
3' ss Seq
AAACATTTTGTATTTAATAGAGG
3' ss Score
4.38
Exon sequences
Seq C1 exon
GGGAGTTCAGACCTAGATCTTTCCAGTTAATCACACAACAAACTTAGCTCATCGCAATAAAAAGCAGCTCAGAGCCGACTGGCTCTTTTAGGCACTGACTCCGAACAGGATTCTTTCACCCAGGCATCTCCTCCAGAGGGATCCGCCAGCCCGTCCAGCAGCACCATGTGGGTGACCAAACTCCTGCCAGCCCTGCTGCTGCAGCATGTCCTCCTGCATCTCCTCCTGCTCCCCATCGCCATCCCCTATGCAG
Seq A exon
GTTAGTTCCCTTCTTCTTCTTCATTATTAGTATTAGTATTTAACTCTCCTGCTAACCTTCCCTATTCCTTTTAACACCCTCTTTTTACCCTATTCCCAGCATCCTTTCTGAACTCAGTATGTAGTATAGGTTTCTAAAAGCTCTCATTATGCTTTTTTTGACATTCTTTTTTGTTGTTGTTTGAATAGCATTTAAAATGATAATTAACTTTCCCTCAACTCCCCTCCACCTCCAACCCAAGCCCCGTCCCACTTAGCCTAATAGTTGTGGATTATGAGATAGGGAGGAAGTGCTAATACTGGCTGAACTTGGCTGCTTTGGACAAGTTTAAAGCTAAAGAGAGGGTCTGGTCTGAAGAGGCAAGAGTGATGGTCAGTCCGGCAGGAAGTCATCCTTTTCCAGAGAACAATTTTTCATGATAATGCACTACTCCACATCACCTAGTCAACATTTGGAGCCAAATTACGACTTTGTACAGGTTTTCATTTTGAGGAGGCAGAATAAACTCTGAGTATTTGCATATCATAAAAATGAAAGAGAAAGCCTCTTTTTAAAGATCTTATTCTTTCTGGGTACGGATGCCTGCCCTTTGAAACTGCAGTGCACGGAGACTTTGATTAAAGCTGCAGAACTGCCCATCTCTGTCTCCCACTTTCTCCCTTGGATTTGCCGTTTGGGGAGGAGTTGCTTGAAAGTTCATATTGCTTGGAGATTTAGAGATCTCGTTTGCTGCTCTGGGAAGTTTCTCTTGTTATCAGGGCAAGAGGAAACATCTGTATTTTGTTGTATCATTGTAGAGGCTGAGGTGCCAACGGGAGAAGGCAGTGAATATCAAGGGTAGGCGCAGGGGAATAAAAGAGTGGGAACAAATGCCCAGATGGAGACATGGCCTTTTTACAATATAAAAAAGAGAACTGGCTGTATCTTTTGAGATGGTAAATATGACATTTATCAGACCTTTGATCTAGTTTTTGATATGGTACAAGGGTTAAAAAACTCAAGAATTTTCTAAATGCAAAGGAAAATCATTCAACCCACCTGGTTTTCTTTTATTTTGTGAAGTGGCCCGTTTGGAAAATGACACTGTTTGGAAAGGGTCACTCTGAAAGCATTTAGGTAAGATTTCTGAAGAAGTGAAAAAGCAGTGAGTTCAAATCAAGCAGGTTATCATGCTTGACATGTGTCATGTTAAAATCGCTTCACAGGGTCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATTGAGACCATCCTAGCTAACAAGGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTGGCAGGCACCTGTAGTCCCACCTACTTGGGAGGCTGAGGCAGGAGACTCTCTTGAACCTGGGAGGTGGGGGTTGCAGTGAGCCGAGATTGTGTCACCGCACTTCAGCCTGGGGAACGGAGCAAGACTCCATCTCAAGAAGAAGAAGAAAAAAATGCTTCACAGATGACTGCTGGTTTAGGGGATTTTGAGCTTAAATTGAAATAATGGCTAATATTTTGAGGGTTTTCATTTTTAAAGATTAAAATGTCACTGTTCTTAAGTAGAATCTGGTTACCTGAATTCATCTGTGCTAACGCAAGGGGAACGCAGTGTGGAAAACCCAAACAGTAGATCAACCGTAGGCAGTGTCTATTTGTTTTCGGCATGCATTATGAACTTTTGGCAGGAGACATACATTTGTAATTATATTTCACTTTGCCTAATGTAGAAATGACTGTGTTTCCTGAGTACAGGCAGAATGCAGCCCAAGAGTGCTGGCAGGCAAGGAGAGTCCAGTTGGGAATTACAAATATGCTGTGAATAATTCCTGAAGTGGATAATTCTAAAATTGTCATCAAAGGAGGGTGCGCCTTTGTTTAGATGGCCAGTTTGATAGTTTTTTTTAATAACCTTTAAAATAAAAAATATGGGTAGCCTCTTAGAACACACAAAGTTTGTTCTTTTTTAAATGACATTTAATATTGACTATTTAGAGGTTTCTTTTGTTGTTACTAGCTTTGATTATAATTATTTATTCTATGAATTTATATTTGTATGTATTGTAAAATAACACATTGTTAGGAAAGAAGTATATACTGTAAGTTGACAACCAGTTATCAACAGAATACACTATGGAGATACTTTTTTAAAAGCTTAAGAAATATTCAATATAATGGGCCCCCGCCATCTTTGTAGGAGTTAGCCTATATAGAATTACCCTCTATTCACTCCCACCTACATGGGAAACAAATATCCAATCCTCTGTAATAAAAGAAGCATTAAATGAGCACCTAATATTCAAGAGTATGTGGGGGATGTAAAGATGAACAAATAAGAAAGGAACTTAAATTTGTTGAGCAACTGATATGAACCAAGTAGTAAAGTACATCTCACTTAATTCTAATAAGATTGGCACTATTGGACTCATTTAGCCGGTTCAAAGACCTCAGTTATCTTATTTCTTTGTGAGTTAAGGGACAGAGCTGAGATTTCTACCCAAATGTATGTGAATGAACTATGTGGTGTTTTTTTTTTTTCTTTTTTCATTTATATTGAAGCGAGCAGCAGTGAAATCAACTGAAATTTACTTAAAAAAAATCATTTGGCCAAGTGATATATTTTCAAAAAACCCTGTTAGAAATACTTTGTACTATGGTTGAGAGTTCATTTTCAGCATAGAGAATCAAACCAGGTGAAGGGGTTATATGGTACTGAAGTCCATATGAAAAGATGGATGGTAGAATAGTCAGTATCTTAGCACAGGATCACAAGTGGCCCAAGGTACAGAGGTTCGTAAGTATAAGGAATGTCCCAGGAAGGACCCCACACAGCAACTGAAGGCAAGCATTTGAGGCAGAAGTATTGGGCATGTGATGGGGAATATTGTCTGTGAGTGGAAAAGTAAGATGAGGTAGAATGGATAGGATTGAAGGTCATGCTCAACCATGTGGTCTTTAAAATGAATGTCATGCGAGCAGCTGAAAGTTTTTTTGTTGAAAATGTACTTGATTGAAGTTGTTCTTCAGTGTGGTTGCTTCAGTTCCTGTGTGGAAGGAAAGTTGTAGGCAGAAACAGACAGTGAAGGTGGAGGCCAGGATGAGGCTTCTAGAAGAATGAAACCTTAAATAAGAACTGGAAAGGAGAAGGAAGAAAATACCTAGGGAGGCCCCTCAAATCACACTGAACATCACTTCATTTTGTAAATCCCCTTGGAAGAGATGATGCTGCAGCTTCTCAAATATCAGCATTTGATTTACATCTGACACAGTCTCTGTCTTCTTGGTATCTTTATTTGTGATATTGTTGCCTTCTCTAAAGAAAGGGAGATGACTGCCGATTTGCAAAAATCCATGTCTTAGATAATAACAACGAAAATTTAGACTTCTATTTGAAATTCTTGGCTTTGGAGAGTTTACAATCTCCAGTCTCAACCATTCCCTTCCATTAATTATTTGTGTACTTTCATCTTAACATCTTGCCACTTGAATCTCTTCATCACTAATCATGTGGATAGGTTTCTCAGAATATGTGGAGCCAGATTCCTGCTTCTTTCCACACCCTGCAAATCCTTTCCTTGCATGATTTTCCTTTGAAGTCAATGGTTAGTCCACACAGAGAAGAAAATATATGAGGTACTGAGAGAAATGAGTGTGAGGTGCCGGGACCAGAGGGAGAAATGTGTCTTTCTTCAAGCACCTTGATACATTTGACCCTACTTTCTGTGTGTAGGTTTTCACTAGGATCCTAATGATTTCAGCTCTAAAACAGGGACTTCAGGTTCTTCAGGAAATATAGCTTCCAGAATGTTTTCCCATACTGGGAGAAGAGGAAAAAGGAGTTGTAATTTAAAGCACAGGAAAGCATGACAAATTTGTAGTGATCTCTCACCCTTTGATTTCATTTCAATATTTTGTTTATAAACTTCAGCTAACAGTCACGCACAAAAAATAGTAGGGAAAAATCTGATCCAAAGATATTTTTGAGTTTCTTCCCAAATTAAGCTTGGCTTTTAACTGTTTTCAGTAAAACAAGCATCAGTTGTTAATACATATGGAGGAGAAAGTTGAAACTATTTTCAGCAAAGGAATTTTATTTTCAGATGCTGTTTTTGAATGACTTCTGTTTTGAATTTTTCTTTTATTGTATAAGGAATTAATTTTATAGATGTGTGGATTACATGATGTACAATTAGCTCCAACTTCATATTTTTGAGTAATTAGTTACTGGCTTAGTATAAATGACTTAATTAAAAGGGAAAGTTTCTATGTCATGAGAACAAAATAGTGAGAAGAGAATTCTGGTGTCTGGTTCTGATTGCCCCTGATAGCTTTGTAGCCCCAGACAAGCTTTTCATTTCTATTTGTTATCTAGTAAAGGGAAATAATAGATTTATTTGTTTTTCAAAATGCTTTTCGATCTTTAGATGAAAGGTAGTGATTGGAAAATTTGTCAGCAAGCAAGGGTAGACTGTTTTTGTGAGGTACAACAAAACATTAACACATTTCAGTAGGACAATTGAGGAGATTTAGAATTAAATACAATCAAAAATTCCACGGAGACCTCTGCTCTCCAGAATCTTCTTCATGGCTTGCCTTCATTTTGCGTGGCATTGAGAAAAGAAACCAGAGCATTGACCAGAGATTTTGTTTCATTTGATACATTAAAATACATTACACATTTAATATTTGTCTTAGACTTTTTGATTTTTAGGCTTTTCCCTCACACTTAGACATGTATACTAAATAGATTATATATCAGGCCAACTTCAATTTTATATTTTTAGTTAATATAATTATACACATATTTAAGAAATACGTGTATAAAACTCTTCTATTTTGGTGAATAGTTGTTTCATAGATTTTTTTCATCAATTAACTATCATTTATTTCTAAGAAACATTCAAATTTATACAGGAAATTATAAAACTATTATGCTATGAAGCATTTCAAAGCACCTTAGAAATAGTGTAATAAGGTCAAAGGAAAGAGAAACTCTTAATGGAAAAACTTATCTCCTATTAACATGGTTCTGTGACAGAAATCAAAATTTGAAATGAATTATGCCTTCTTTGCTTGGAAGAATCACAGTTTCTTCTTCATGCCAGAGATTAAAGGATAAAATTTCAAAAACAAAACTAAAACTTTGCGTATTTATAACATTTTTAAAAATCCAAATTGATTTTCAAATATTTACTTAATGGTTACAGTTTAATGTTAACATAACTTTTATATTTTAGATTGAGAAATTGGGATGTTAACATTTCAGGTAATTAAAAAGTCATTTGACAAGTCAATAAGATTGCCAGTGTTGTACAAGGCATTTGGTCCATGCTCAATAAATAACATGTTGACAGATTTTTGGTTGATTTCATTTTCATGTTAAAATGTCTTTTAAACTGTATCTGTTGTACCATAGCCATTCTATCCTGTAAGGCAAAGCAAAATTAAAAATGAAAGCATCATTGCAGGAATTAGTATTGTCTTTTGGAGATTGTGCTTTGGAGTTTTACAGAGATTCAGAAATTTAGAGGACCTCGTGTTTTCTCTAATTTATTGCAGCCTTCAAATTAGGATGGACACTAATTAGTAGCATCTGCTCATCTCATAAACCAACTGGAGCCAGTGGTTGCTGACAAACTTAGAGTATGATGGCATTTTTGGTACCTCACTCTGCTAGTTGTATTTCCAAATTTTGTGCACACAAATTTTTACTCTCCTTTTTTGACACATTTCAACACAGATTCAGATCAGGAATGTATTTCCTGCTCTACTATCCACATTTCTTCTCTACTGCTAGCTCTAAACCAAATTTTCAGGAAAGTGTTACATGCCATATTTCCACTACAATCTTAGCCATTCTTAGCTACAGATGGCATGGTCAGTGGTTCAGAGTGGTGGTTTTTAAGTCAGCCTGCTGGGTTTCCAATCTGAGATCTTCTAAGTGGTCAATTAATTTTTTTCTATGTCTTGGTTTCTTTGGCTGAAAAATGAATGTATCCTTACTGCCTTTGGTATAAGCATGTTTGAAAAGAATTGACAGGCAGAGGGGCACAAGCACATCTATCCTTATTACACAATAGCTGCACTCTATTAAACATTTTGATCTGCATTGTGAAGATGCTGATCACTAACAGATTGGGGCTATTTTGGGCAAATTGAGAATACAGAGAACAAGTTTTTGAAACACTAAAGTTATCCATAAGATTAGGTCTTTTAGAATGTTTTAGTTCTGTTTTTCAGATTTTCAGTAGAAGGCTTCATGCTATCTAGGCGCCTTGTATTTTCATGAAGAAAAATGATATTGCTGCATTAAAGGATGAAGTTTTACATACATTTGATTTACAGCATTTGGCTTGATCTCAAGACAAATAGTTCGGTGATACCAAGAAATAGTGTCCAAAAGCACAGAAAACATTTATGCACTAAAGGAGGAGAGAGGGGCTAAAATATGAATAACATGAAAGACTTTAAAGAGTAGGTCAGAAGAATTTGTCCACTGTACAGTTTTTAGTGAGACGTTTCTCGCCTGTCTTTGTGTTGGCTTATCTCATTAAATACTATAACGTATATGAGGACCAATTGTAGAAGGAAATGAAAAGTTTAATTATAAAGCATGATATGATATGCTTCTAGCACTGATATTTCCTTTCATGATGTTTGGAAAATATCATGTTATTTATTTCTTTAGTGTGAACTCTGTCCTGATTTTTAAAAGCTCCTTAATTTGAAAGAATGTAAATGAGTGACTCTACATGACAAGTTATTTGTTTTTCCTTGATTACAATATTCCTCTCTTTCTCTTAACTATTCCCTACCTCACTCTGCTCCTAACCCCTGGAAATCTAGTATATTGTCAAGTAAAATCACTTTCTTGTAGATGATCCTTAGGATTTTTTTTATATATGAGCCTTAAAAACATTTCTCCAATGTTTATTTTTTTAAAACATTTTGTATTTAATAG
Seq C2 exon
AGGGACAAAGGAAAAGAAGAAATACAATTCATGAATTCAAAAAATCAGCAAAGACTACCCTAATCAAAATAGATCCAGCACTGAAGATAAAAACCAAAAAAGTGAATACTGCAGACCAATGTGCTAATAGATGTACTAGGAATAAAGGACTTCCATTCACTTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000019991-HGF:NM_001010934:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.018
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0002421=PAN_1=PU(53.5=82.1),PF0301514=Sterile=PU(42.2=67.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)