GgaINT0123753 @ galGal4
Intron Retention
Gene
ENSGALG00000001645 | Segment
Description
Potassium channel subfamily T member 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8QFV0]
Coordinates
chr17:8226483-8227247:-
Coord C1 exon
chr17:8227168-8227247
Coord A exon
chr17:8226583-8227167
Coord C2 exon
chr17:8226483-8226582
Length
585 bp
Sequences
Splice sites
5' ss Seq
CGAGTGAGT
5' ss Score
8.49
3' ss Seq
CTGCGCCGCCTCCGCCGCAGGTC
3' ss Score
8.37
Exon sequences
Seq C1 exon
GGTGCAGGTGGAGTTCTACGTCAATGAGAACACCTTCAAGGAGCGCCTGAAGCTCTTCTTCATCAAAAACCAGAGATCGA
Seq A exon
GTGAGTGCTCTCTGCCCACGCGGCGCTGGGGACATGGAGCCATTGCCATCTGCTGGCAGTTGTCCCCAGCTGTCCCCAGACGTGCCACCCCCGTGCCCCATCCCCATGCAGAGCAATCAGCCCCCGCTTTGCCTTTGGCCCTGCGGATCAGCTGCCCATTGCCCAGCATTGCTGGGAGCTATTTTCTCATTAGCTGTCTGCGGGGAGCCCACTTGTTAATTCAGAAGTGTGTGTTCCCCCTCCCTCCCTGCATCCCGTCGCCTCGCTAACAGACCGAAGTGTGGCACGGCGGGGTGCCCGTGGGGAAGTTTTTAATGGAAATGTGATGAATTCCTTGCTTGTAATTTGAGTAATAATGTGATGCTGGGGAGGAGGCAGCCCCCCCCACTCAGCCCCCACTGCTGGCTGCCCAGCCAGAGCTTTACTGGTGCTGCTCAGGATGGAGGGGGCATGGAGCCCTGGGTGAAGCGTGGGTGTGCTCCGGGGATGGCTGTGCAGGGGGTGCCCCATGCGGAACCCCATGGAGATGTCCCCTCTCCTCTGTACCCATGGGGCCATGCCTGTGCTGCGCCGCCTCCGCCGCAG
Seq C2 exon
GTCTGAGGATCCGACTGTTCAACTTCTCCCTGAAGCTGCTCACCTGCCTGCTGTACATCGTGCGTGTGCTGCTCGACAACCCAGAGGAGGGCATAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001645:ENSGALT00000038919:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]