GgaINT0123771 @ galGal3
Intron Retention
Gene
ENSGALG00000001645 | KCNT1
Description
NA
Coordinates
chr17:8914786-8915193:-
Coord C1 exon
chr17:8915021-8915193
Coord A exon
chr17:8914858-8915020
Coord C2 exon
chr17:8914786-8914857
Length
163 bp
Sequences
Splice sites
5' ss Seq
CAAGCAAGT
5' ss Score
2.32
3' ss Seq
TTCTGTCGCTCTTCTTGCAGACC
3' ss Score
11.2
Exon sequences
Seq C1 exon
GGCTGCAAGCACAACAGCTTTGAAGATGCCAAAGCCTATGGCTTTAAGAACAAGTTGATCATCGTGTCGGCAGAGACTGCAGGCAATGGGCTGTATAACTTCATCGTCCCACTGCGTGCCTACTATCGGTCTCGCAAAGAGTTGAACCCAATTGTGTTGCTTCTGGACAACAA
Seq A exon
GCAAGTACTTCTCCACAGTGCTTTCTCTTGCACAAAGCCCTTCCCTGTGTTATCATGGGCATTGCACACTGCATGGGGCAGGAGCACAACTCTGTCGTGGGCTGTGCATCCCATTGTTTGGTGGGTTTCTGAACCCTGTTGCTTTCTGTCGCTCTTCTTGCAG
Seq C2 exon
ACCAGAGCACCACTTTCTGGAAGCCATCTGTTGTTTCCCCATGGTTTACTACATGGAAGGCACCATTGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001645:ENSGALT00000038919:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAACAGCTTTGAAGATGCC
R:
TGTCAATGGTGCCTTCCATGT
Band lengths:
236-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]