GgaINT0123772 @ galGal3
Intron Retention
Gene
ENSGALG00000001645 | KCNT1
Description
NA
Coordinates
chr17:8914357-8914857:-
Coord C1 exon
chr17:8914786-8914857
Coord A exon
chr17:8914492-8914785
Coord C2 exon
chr17:8914357-8914491
Length
294 bp
Sequences
Splice sites
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
3' ss Seq
TCTCTTTGGGAACTGCCCAGCCT
3' ss Score
-0.2
Exon sequences
Seq C1 exon
ACCAGAGCACCACTTTCTGGAAGCCATCTGTTGTTTCCCCATGGTTTACTACATGGAAGGCACCATTGACAA
Seq A exon
GTAGGTGCTCCAGTCTGTGGCTGTTGTTAATTATAGGATTGTCTTAGACATGTTGCATTCACCCCAATCCGCAACCCATTCCCTTCCCATTCCATGGGGAGATAAGGGCTGGCTGTGGCAGCCCCCACTGTTGGCTTCTCACCTTGTTGAGCCCAGCTGGGAGATGGGGGTTGGTGCTGGGCTGGTAGCTAGGAGCAGCTGGGTTGGCTGCAGCGCTGTGCGTCGCAGCGTGCTGCTTCCCCGTGTCGTTTCCAAGGGCTGACCCCTGCGCTCTTCTCTTTGGGAACTGCCCAG
Seq C2 exon
CCTGGACAGCCTGCTGCAGTGCGGCATCATCTACGCCGACAACCTGGTGGTCGTGGACAAGGAGAGCACCATGAGTGCTGAGGAGGACTACATGGCGGATGCAAAGACGATTGTCAACGTCCAGACCATGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001645:ENSGALT00000038919:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCACCACTTTCTGGAAGC
R:
CTGAACATGGTCTGGACGTTGA
Band lengths:
204-498
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]