GgaINT0123774 @ galGal4
Intron Retention
Gene
ENSGALG00000001645 | Segment
Description
Potassium channel subfamily T member 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8QFV0]
Coordinates
chr17:8217980-8218749:-
Coord C1 exon
chr17:8218638-8218749
Coord A exon
chr17:8218082-8218637
Coord C2 exon
chr17:8217980-8218081
Length
556 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
GATTGTCTTTCCTCTTCCAGAAA
3' ss Score
10.99
Exon sequences
Seq C1 exon
GCTCTTTCCCAGCCTCAGCATCATCACAGAGCTGACCCATCCCTCCAACATGAGGTTCATGCAGTTCAGAGCAAAGGACAGCTACTCCTTAGCCCTTTCCAAGCTAGAGAAG
Seq A exon
GTAAGAGAAAGCTTTGCCTTCTGGGAATTCAGCACTGGGAGTCACTAATCCTGAGTTTGCTGTGGTCCTGTTCTCCTCCACACGCTTCACTCTGCATCCATCCAATATAACCTGCAGCAAACAAATACGTGGGTGGGTGATTTTGGGGCTGTCTGCCTCTTCCTACGTGTTTATGTGTTTCTTGGCTGCTGAAGGTTGTGCTGCTTTGCCTGCTGCTATGTTGGGAGCAGGGCAGTGAGTGAATGGGTGCAGGGATGCTCCAAGCAGGGAACCTCTGGGCTCAGCGCCGTGCCTGCAGCAGTGTCACTGTGCTGAGGTCTCCTGACAAGGGCAAACATCCCCAAGGCAGTGAGGCACGTGGAAACACCACATCCAGCCCGTAGCAAAATAAAGCCATGATGTCTCACACGTTTCCATGGAGAAAAAAAAAAACTTCTTTCACCACAAAACCCTCTTTCCCTGCCTCCCTCCTGGCACGCCCACCGGAGATGCTCAGCTGCTGTCCTCCCGTTCAGGTGAGCCTTCAAGGCCTCGTGGATTGTCTTTCCTCTTCCAG
Seq C2 exon
AAAGAGCGCGAGAATGGCTCCAACCTGGCCTTCATGTTCCGCCTGCCCTTCGCTGCGGGGAGGGTCTTCAGCATCAGCATGCTGGACACGCTGCTCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001645:ENSGALT00000038919:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTTTCCCAGCCTCAGCAT
R:
CTGGTAGAGCAGCGTGTCCAG
Band lengths:
214-770
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]