GgaINT0123776 @ galGal3
Intron Retention
Gene
ENSGALG00000001645 | KCNT1
Description
NA
Coordinates
chr17:8912831-8913020:-
Coord C1 exon
chr17:8912987-8913020
Coord A exon
chr17:8912915-8912986
Coord C2 exon
chr17:8912831-8912914
Length
72 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
CATTTCCTCCCCTCCTGCAGTCA
3' ss Score
8.86
Exon sequences
Seq C1 exon
CAGCATCAGCATGCTGGACACGCTGCTCTACCAG
Seq A exon
GTGGGGGGAGGCACTGGGGGCACGGCTGCCTGCTGACACATACCAGGGTTGACATTTCCTCCCCTCCTGCAG
Seq C2 exon
TCATTTGTGAAGGACTACATGATCACCATCACCCGGCTGCTGNTGGGCCTCGACACCACGCCGGGCTCTGGCTACCTCTGTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001645:ENSGALT00000038919:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGCATGCTGGACACGC
R:
CACAGAGGTAGCCAGAGCCC
Band lengths:
112-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]