GgaINT0123779 @ galGal4
Intron Retention
Gene
ENSGALG00000001645 | Segment
Description
Potassium channel subfamily T member 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8QFV0]
Coordinates
chr17:8214941-8216567:-
Coord C1 exon
chr17:8216264-8216567
Coord A exon
chr17:8215004-8216263
Coord C2 exon
chr17:8214941-8215003
Length
1260 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
3' ss Seq
TTTCCCTGTATGTTCTGTAGAGG
3' ss Score
8.21
Exon sequences
Seq C1 exon
TCACAGATCTCCATCAACGTGGAGGACTGCGAGGACACGAAGGACGTGAAGGAGCACTGGGGCATCAAGACGGGCCACCACAGGAACTCGTGCTCCAGTGACCAATCCGAGCACCCGCTGCTGCGGCGCAAGAGCATGCAGTGGGCACGGCGGCTGAGCAGGAAGGGCAACAAGCACTCTGGCAAGACAGCCGAGTGGATCAGCCAGCAGCGGCTCAGCCTGTACCGCCGCTCCGAGCGGCAGGAGCTGTCCGAGCTCGTCAAGAACCGCATGAAGCACCTGGGTTTGCCCACCACCGGGTACG
Seq A exon
GTAAGTGATGTGCGGTCGCGCTTCCCTGCGGCGAGGCGGCCCCGTGGGCTCCGCAGGTAAATCCCCATCCATCACGCCCGAGCCCTGCAGGTGCTGCTGGACCCGTCTCTGGATGCTGCACAGCAATGCAGTGCGCATCGCTCCCGGGGTGGCTGCGATGGGGTCTGTGCCTACAGGAGCTGTGCCCGCGGTGCGTGGGCAGCCTTGAGCACACAGAACCGTCGAATCATAGAGTGATAGAATGGGTGGGTTGGAAGGGACCTCCAAAATCATCTAGTTCCTACCTCCTGCCACGGGAAGGCTTGCCAACCAGTAAAGCAGGCTGCCCAGGGCTCCAGGTTGGCTCTGTTTTGGGTCAACTCATCCAAATCCCGCAGTGCTGCAGGGCTGGTGCTGCAGCTCTGCGCCGTCACCGCGCTGTATCTCAGGAGCATCCAGCGGGGCTGGGCTGGCTTGGTGGTGTGTGACGGCCGCGTGTGTCACTGTGCTTTGTGCTGACCCCACGTATTTCTGGTGGGGACCGCAGCCCCGCGCTGGTGCCGGAGTCTGTGTGCCCGCACCCGCCCCGTGGTTACGGTGAAGTCCTTCGCCCATGGCTTTCTCGGTTCGTTTTGTCTTTCTGCCCTGTGAGCCATCCCGTGCTGCCTTCTGTCTCCTCCATGCCAGACCCCTTCCATCGCCGCAGCCGGGCCCTGAGCACCGAGCACTGAGCCCAGCTGGGGTTTGCTGCCTGCAGCCAGGAGAGTGGGAGAAATACGGACAAGTGTGGGGAAACAGAGGGCACACAGGAGTGCTGGGGGCATGTGACAGCTGCTCCATGGAGGGGAAGGTGGGGACAGCACTGCTGGTTCAGCTGCACACCTGGCACTGCTGCCTGCGGGCGATGCAGCACTGAGACGGAGCTCTTTGTCCCTACTCCCCTCATCCCAAAAGTTTCCTTGGCTCATTCTGGGGGATGCAGCTCTCTTTGCTCTGTATCGCTCTGCTGATGGCAGTCGGTGCCGCAGTGCTGTTACAGCCGGACTGCTCAGTGCAGCTCTGGGGCTCCAGCTGGGATGTGCGTGGGCTCCGGGGCACGGCCAGCATCGGTGTGCTTGGTGGTTGGAAGGACACTGGCTCTGCCTGCTCTCCTTGCCTTTATCTTTTGCTCCTTTATTGCCGAAGTGCAGCAGCTCGTCTCTAATATTTGCCGAATCATGGCTTGCTGACCTCTCTCTCTCTCTCTGTTTATGTCTGTGCCTTTCCCTGTATGTTCTGTAG
Seq C2 exon
AGGATGTAGCAAATTTAACAGCCAGTGATGTGATGAATCGGGTAAACCTGGGATATTTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001645:ENSGALT00000038919:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.364
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCATCAACGTGGAGGACT
R:
CCCAGGTTTACCCGATTCATCA
Band lengths:
349-1609
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]