GgaINT0124368 @ galGal4
Intron Retention
Gene
ENSGALG00000004719 | SPTAN1
Description
spectrin alpha chain, non-erythrocytic 1 [Source:RefSeq peptide;Acc:NP_001036003]
Coordinates
chr17:5165966-5166351:+
Coord C1 exon
chr17:5165966-5165989
Coord A exon
chr17:5165990-5166315
Coord C2 exon
chr17:5166316-5166351
Length
326 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
TTCTTCACATTTTTAAACAGGAT
3' ss Score
9.16
Exon sequences
Seq C1 exon
GAAGTCTATGGAATGATGCCCAGA
Seq A exon
GTAAGTGTTAATTTCCATGTGGCAATTTTAACAGTTTGGAATGTAAAAGTTCTGCCATGGTTGTAATCCATTTGCATGAAGGAAGTCATTAATGATTTTGAGTGGATGTAGAAAGATTATCGCACCTTAGGTCTGTTCATTTAGTGGGTATTGTACTCCACATCACAAATCAATGCTGAGCAGGATAAGCCAAAATGACACAAATATGTAGTTGTAAGAATTGATATATGCTGTTAAGGATTGAGCGTGGAGATGTCTCAGGTGTCTCAGAAATAGTTTGAGATTTTGCTTCATATTTAAAGCTGTTTCTTCACATTTTTAAACAG
Seq C2 exon
GATGAAACTGATTCTAAGACAGCCTCTCCTTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004719:ENSGALT00000039770:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(1.2=12.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]