DreINT0155176 @ danRer10
Intron Retention
Gene
ENSDARG00000019231 | spna2
Description
spectrin alpha 2 [Source:ZFIN;Acc:ZDB-GENE-051113-60]
Coordinates
chr21:13086922-13087120:+
Coord C1 exon
chr21:13086922-13086954
Coord A exon
chr21:13086955-13087084
Coord C2 exon
chr21:13087085-13087120
Length
130 bp
Sequences
Splice sites
5' ss Seq
AAGGTCACT
5' ss Score
3.39
3' ss Seq
TATTATATTTTATTTTGCAGGAT
3' ss Score
11
Exon sequences
Seq C1 exon
CAAGTAGAGGTGCTGGGCTCAGCTCCTGGCAAG
Seq A exon
GTCACTATTGTTTAATGTCATTCATGTCGTCTCTTCAAGATCATCTGCATGCCTGCATGAAACAAACACAAATATTGTGATTTATTTATTTTTTGACTTGTACTAATTATTATTATATTTTATTTTGCAG
Seq C2 exon
GATGAAGCAGACTCCAAAGGTGCATCTCCATGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019231:ENSDART00000102251:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(6.7=54.5)
A:
NA
C2:
PF0039314=6PGD=FE(9.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]