HsaINT0158377 @ hg19
Intron Retention
Gene
ENSG00000197694 | SPTAN1
Description
spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) [Source:HGNC Symbol;Acc:11273]
Coordinates
chr9:131361242-131362394:+
Coord C1 exon
chr9:131361242-131361265
Coord A exon
chr9:131361266-131362358
Coord C2 exon
chr9:131362359-131362394
Length
1093 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
ATTCCTCTTTCTTTGAATAGGAT
3' ss Score
10.28
Exon sequences
Seq C1 exon
GAAGTGTATGGCATGATGCCCAGG
Seq A exon
GTAAGTTTCGGGTGCTGTGTGTGGATCTTGAACATGAGAAGGACTTAAATCTTGGGAAGAATATCAAGCCAAGAACTTCTTCATCAGAATTGCTGTTCCTGAACCTCAGATGCCTTTTGTGTGTAAAGATTTGTGGAAAACTCCAAAAATTGATTTCTTTTTTTTTGAGACGGAGTCTCACTCTGTCAACCAGGCTGGAGTGCAGTGGTGTGATCTTGGCTCACTGCAACCTCCACCTCCCAGGTTCAAGCGATTCTCCCATCTCAGCTTCCTGAGTAGCTGGAATTCCACGCATGTGGCACCACACCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGTCCAGGCTGGTCTCGAACTCCCAACCTCAGGTGATCTGCCCACCTCAGCTTCCCAGAGTGCTGGGATTACAGACGTGAGCCACCATGCCCAGCCCAGAAATTGATTTCTATTTGCCATTCTCCAAAAGACAAAAAAAGTTGGTTTTTTTTTTTTTCGGTCTTTTGTTTGTTTGTTTGTTTTTTAAGAGATAGGGTCTTGCTTTGTTGCCCAGACTGGAGGTCAGTGGCTTTTCACAGCTGCAGTTATAGCCTACTGCAGCCTCGAACTCTTGGCCTCAAGCAATCCTCCCACCTCAGCCTCCCAGGTATCTAGGACAACAGGCATGCAACACAAAGCACAGCTCTAAAAAAAAAAAAAAAAAAAAAGTCTTCTGTCTCTTCAGTTTTCTAAAACTTTTTCTATAGCTATCTTTAGGTTCATTTATTACCCCTTTGCAGACAATCTTATGAGTACAACATAAAAGTTGGTGGTTTTCTTATTAAATTTCTTTATTCTCTCCATTTCTTCTACTGGATAAAAAAATTGGAATTTTTCTCTCCCCTGTTTGTTGGCTTAATTTTTCTTAACCAGCCTTGTAGTTTGTTACCAGCCAAACTATGGAGGGAAAATGCTGTTTTGGTTAATGTATTAGTATCTGGGATCTCCCCTGGGGGAAACTAGAGTCATTCGCTGGAAAGGCCAGGTGCTTTGTTTCATGGTCAATTGCTTGGCTGCCTAAATTCCTCTTTCTTTGAATAG
Seq C2 exon
GATGAAACTGATTCCAAGACAGCCTCCCCGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197694-SPTAN1:NM_001130438:26
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(2.4=25.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)