MmuINT0151711 @ mm9
Intron Retention
Gene
ENSMUSG00000057738 | Spna2
Description
spectrin alpha 2 [Source:MGI Symbol;Acc:MGI:98386]
Coordinates
chr2:29859194-29860060:+
Coord C1 exon
chr2:29859194-29859217
Coord A exon
chr2:29859218-29860024
Coord C2 exon
chr2:29860025-29860060
Length
807 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
AGCTCTCCTTCTTTGACTAGGAT
3' ss Score
8.43
Exon sequences
Seq C1 exon
GAGGTGTATGGTGCGATGCCCAGG
Seq A exon
GTAAGTCATGGGCCATCCATATGGAACTTGGATTTAGCAAGGATTTAGATCTTGGGAGTATATAAAGGCAAGAACTACAGAGTGACAGAGACCTTTTGTTGTCCATATCTCTTTTTCACATTTTACACATCTCTGCTGCCTGTCATTCCCTAGAACAAAAGTTTAGGAGTTTTTTTGATTTAGGTTTTGTTATTAGACTTATTTAGCTCAAACTAGCTACAATTTCACAGTCCTTCTGCCTCAGCTGGGATCACAGAGCTCACCGCCTTCCTGGTCACAGCATGCTTGATCTTTATCTTTCTAATAATAATTTCAATAGTTTTCAAATAACTCTATGCGCATGGCATAAAGAAAAGATGGCCATTATGTTGAGGGTTTTTTTTTTTTTTTCTCATTCCTTCTATCTCTTCTACTGTATTTGGGGAAAAAAACAATAGGGAGCTGTAGAGTTGGCTCAGCAGTTCCAAGAACTCGTTGCTCTTGCGGAGAATCTGAACTCAGTACCAGCATCCACATGGTGACTCACAACTATCCATAGCTTCATTCACAGAGGATATGATGGGCACCAGGCGTGCAGATGGTGCACATGTATACACACCAACAAAACGCTCATGCATGCAAAATAAACCCTAAGGGGAAAAGAGGACTTGATGATTCTTTTCAGGCAGACTTTGGTTGGTTGCTGGGCGGTCAGATGTGTTTCAGAGTGGTGCCGATGAGCTGTTGCAATTCCTCTGGGATCACAGCTGGTGACTGGGGAGGTTCTGTGCTCTATGACAAGCTCCTAAGCTCTCCTTCTTTGACTAG
Seq C2 exon
GATGAAGCAGATTCCAAGACGGCCTCCCCATGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057738-Spna2:NM_001076554:25
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.917
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(2.4=25.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: