GgaINT0124857 @ galGal3
Intron Retention
Gene
ENSGALG00000021274 | F1NJE7_CHICK
Description
NA
Coordinates
chr17:1325799-1326836:-
Coord C1 exon
chr17:1326726-1326836
Coord A exon
chr17:1325937-1326725
Coord C2 exon
chr17:1325799-1325936
Length
789 bp
Sequences
Splice sites
5' ss Seq
GATGTATGT
5' ss Score
6.31
3' ss Seq
CTCTAACATGCTCCTCCCAGCTG
3' ss Score
4.47
Exon sequences
Seq C1 exon
GCCTTTTCTGCTTTTTACTACAACTTCAAGTTTCTCAACCTGACGGAGGGACAGTCACTGGCCACCGTCAGGGAGACCATTGAGCATTTCTGTGCAAGAACCTGGGAGGAT
Seq A exon
GTATGTTTCTTGTTATGGGAAGCTATGGGGAAGCTTCAAAAGCAAATGGGTGGGGGAAGAGGAGCAGTGACTCAGCCAGGTCGCTAAGCTGTGTCCTACGCAGCAGAGCCATCCCAGAGCTCTAGGAAGGAGCCAGGACAATCCTGAAGCCACCCTCAGGGGTCCTCCTTGCTCATACAACACATACATGATGGGGAAAGGGGTAGGTCAAAGCATCCCAGGAGCTGGGATGGAGGTGAGGATGGAGCTCTGGGGGGAGGGTGAGAGGAGCTTGTGCATGACACCGCTTTGAGGAAGAGTCCAATGGGGCAAATAAGGCCAAGAGATGTGGTAGAATCACCGTGGGACAGAGAGCAGGAGCCCTTTCCACAATGAGGCTGAGATGGGAGAATGCGGGGTGAGAGGACCTCCATCCAATGTCTATTTCACATGGGAATTAGATTTTCCTGAGAGGAGTTGTCCTGTGTAAACAGGTCCAAAACACCTCAATTTATAGAAACTAGAGCTGGACAAGACCTGCAGGGACCACTGAGCCCAACCTGGCCCCACACAGCACCACTCAAACCCCAACCCTACAGCTGAGAGTGATGTCCCAGTGTCCCCTGAGCAGTTGGGGCCGTGCCCACTGCCCTGGGAGCTGTGCTGTGCCCTGCATCCAGGTCATTAATCGTAACATTAAAGACAACTGGTCCTAAAACGGAGCCCTGTGGAGCCCTACTCGTGTCTGTTCACCAACCTGGAAACTACCTACAAATAACTTCATTTCTTCCTCTAACATGCTCCTCCCAG
Seq C2 exon
CTGTCTTCTAATTACCCCGAAGAGAATCCTGAGCGACTGCCTAAATACTGTGCCAATGCCAACTACATCCTCACACTCCTCCTTGATGCCTACAAGTTCAACGAGACCAGCTGGAACAACATCTTCTTCCAGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021274:ENSGALT00000014517:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(8.4=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(10.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTTTCTGCTTTTTACTACAACT
R:
AGAAGATGTTGTTCCAGCTGGT
Band lengths:
238-1027
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]