GgaINT0125250 @ galGal3
Intron Retention
Gene
ENSGALG00000003683 | MED27
Description
NA
Coordinates
chr17:6985170-6995169:-
Coord C1 exon
chr17:6995076-6995169
Coord A exon
chr17:6985278-6995075
Coord C2 exon
chr17:6985170-6985277
Length
9798 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TGTCCTCTTGTTCTTGATAGGTT
3' ss Score
11.25
Exon sequences
Seq C1 exon
ATACGTTGATGATGTGATCAATCGCATTGATAGGATGTTCCCTGAAATGTCTATCCAGCTCTCCCGGCCCAACGGGACCTCTGCAATGCTGCTG
Seq A exon
GTGAGTTGGGTCCTTTTGTCCTTTCTGATGGATTTCTTAAGGGATTGCATTGCTATTTCTAAAAGGCAGGCTATTAAAGATTGTTTTTTTCCCAGAAACATTCTGCTCTTCATTTGACACAGCGGTGTAAGATCTCTTTTGCTTTTAGGCAAATAGATGATAAAAAGAATTTCACCTTTAAATGCTTTTGGTTGTTAAATAAGATTGTTGAAATATGAACGTGAGGTCAGATACCGTGTTTTTCAGCAGTCTTGGCAATGAGTATATCTCAATCATGATAATTAAGAAGAAAAAGAAGTAGGGTAGGAAGAGAGAAATTATATTGGTTTCCTTTGTCTAAATTTGTTCAAATTGTTCTTGGTCCAATGAATTTCTGTTTTATGATGGAGTCAAGAATTTGCCTTTGAAGTAAATGAGCAGTAAAGGCCGGATTATAGATAAACAAGTCCAATACATTCGACTTATTTCTGCCTGACCAAGCAAGATTTCATTCCAGAAGAGCCTATTGTTCACTTCAATCTTCACAGGCAGCTGTTGTGCTTAGAGAAAGAGAGGAGTCTGTGAAGTTTTCACTCTAGGACAGCAGCACAGGAATAGGGTCTGCTGAACTCCTACAGCATGGCACTTGGAAGCTAGTTCTCCTGCAGCCGAGCAAAAGGCTGAAGTCGCATCTTTTGAGAGCTTTTAAATGGAAGTGGAAAATTCTATATCTGAGTGAAAATTTGGGACCAAATCGGTCTTTTCCATCACAGATCATTCGTGGCACGTCCTCACGTAGGCTGCTACAAAAGGCTTGGGTATAGTGTATGTGTGAGTGCAGTTATTGTTTCCAAGCAAATGGTGAAAGGAATCTAGAGATGAGATATTTTGTCAAAACAGCTTTCTTGAATCAAGAGTTTATGGTTTTTTAGTGTTTGCTAAATTGAATACTCTTATTTTTAGATTTTGCCTGTATTTTTCAAAATTACTATTTACGTCCCAATAATAAGTGTAGCTGTGATTACATTCCCTTTTAATTAATCCATTCTTAGCATCTTACTATTAACTTTCTTTGAGTGGCCCAAAATTTGCCAGAGATTAACTGAGTCAGAGGTTAAAATATACAGCTGGCTTCCAGTGGCATTAAATCATTTAATCTGCAATTGTTGGATTCACCAAGTGGAACAACATATTCCATAAAAGAATTGAATTCATCAGTGCAGTCTTAAGAAGCTCTAAGTCGTGGAAGCTTTTGCATTTGCTGTTAAGCTGACTTCATATTTAACTGTTTCGCTGTAGAAAAGAAAAAGTCTCATTTTACTTCCTTGCTTGGAAACCATTTCCATTCTCTTAGAGTCCCTCTCTGTACCCAGTAATTGCCTTCCAATTCTGATGGCTTTTTGAGGTCAGAAAGCATGTGATGCTTTTCAAGAATTGGGCACAACTGGGAGATTTTGTGAGTTATCTTGGGTAAAACTGGTTGGGAGCAAGGTGCATTGGAACAATGGTGGCTGTAAAAGAAGCCTCATTTGCAATTAGTAACAACTTACCAAATAGCGTTGGTCTCTAAATCAAGGACATTATTGTTGCTACAAGACAACAGCACTGTATTGAACCAATGGATTGCATATTTTCCTTGGATCAGAGATCAAAACCACTGTTTTTAAAGTATTTTTGCATGTGATTTTGTGATGGGTTTATCATTTTTTCTTTTAGGCAGGTTTTCCCTCTTTCCCATCTGTCTCAGTTGATGTTGCCAATATGGCACTTTCCATCTGGCCTCGACTGCTGCAGAAGCTTTTGCTGTTTTCAGCCACAAATCATTCAGCGAAAGGTGCTGCAGGATGGGCAGTGTGAAGAGCACCTCCCCCAGAAGAAGGGAGGTTTCTGCAGAACTTGTCATTTCTCACTCTGAAATCATCCCAAGTTAGATGTGGAGTTGCTCTCCCGCAGCAGTGATTTACCATAATGCCAAGGGATCCAGATAATGCTGGTTTTCTTTAAAAATACTTCATGGCCATATAGTTTGTCCAGAGATAATTAACCAACCATAATCTGAACCATTTTCATTTGTGTGGTGTTTGTATCATACCTGCCATTGCTTATGAAGGTCTTTACTGCAGAGGCATCGTTGTTATATTAAGATATCTTTAAATCCAATCCTTTGGCTTGCCAGAAACACACACATTCGTCATCAAAGGCACTGATAAGCAGGATATATATTTTAAGAATGGGCAAACTATTGGAAGGAGGTGGGGAAGAAGGATCAGGGCGTGCCTGTGAGATTCTTTGAAACTGCAGAATTACTGGAAATGGCCTCAACATCATCTTCAGGAAAAAGAGATCTAATTCAGGAGATTTCAGCCCCGAACTGATCGGTGCCCACCTTCGTATTCATGTGGAAATCAAGATACGTCCTTAGCTGTGGTAGTGGAGCTTTCAGATCCTGCATGTTTCTAGAGAGGTAATTACAGCTGCAGGAGCTGCTGGTCTGAGTCCCGGGGTTGGTAACCTCTGCATGGTGCTGAGCTCTCCCTCAGCACAGTACAGCTCTCCAATAAGCTGAGAACTTTAAGTTGGGGGGGGGAAGAAAGTATTCCTGTGAGCACAAATGCTGTGCCTTGAAAGGTTTCTGCCTCCTGCTCCTTTGAGGGTCCTGCTTCCTCCAGACAATAAGGAGATTTTTGTGTTGTAGATTTATACACAGCAATTGTACCTCATTAGTCTGGATTTATGCTGCACAGACCAAACACATAAATAATTGAAGCCTTTCAGAGCTGTGTGAAATCCTCAACTGACTTTAAAAGCAGTTTACCATTTCAAGGTGCTGTTTAATCCCAATCTTCACTAGTGATTTTTCTATTAATCTTTTAATCGCGCTCTGCATAAAAAAGACTAAACATAGAATTATATCAGCTCTAATAACAGTGTTATGCAAAATTAATTTGCAGCAGCAGCAGAGGGAACTGAGGCCTTCTTAAGATTTTTGTGAGATTTTGTTGGTCAACTGCCAGGAACTGTAAAGAGAGAAACCTCATCTCGTGTTAAGAAAACACAAATTGATTTTTAATTAATGAAAAATACCTGCAGTTTTGATGGTATTAAACAGTCAGTTTAATTCCTAGATGGACTTTGTTTATTTCTCGTGAAGGGTGGTACAACCTTTGTATGGTTGTTTCACATACCTTGTTTCTGTTACCAGCATTAGGACCATTTTTTTCAGTGTGAAACTTCTAATTCCTGAGTACAATTCGTTCCTTTGATATCAGAAGTATTTTACAGCCCAGTAAGTATTAGTCCCATATAGACTTCTTTAGGGCCAAGCACCTGGCCAGCCCTACGTAAACACAGCAACTTCTGCTCATCTTGGTCCAGGAGCCACTTGGTCTTCAAGCATCATTGTCACCCCAGCGTTTGTAAAGCTATGTATGGTCACTGCTCTGCAAGTTAGGGACACCAGGTAAATATTTTTACTGATAATGAATGGCTTTCTGTACACTGAGCTGTTTCTGAAGCACAGTGCTCTGTGTAACTAACTCTCCTTTGGAAAAGTTGTTTCTGCCAAAGCAAAGCTCATTTCAGAAATTGCCGTTTCTTGTTTTCATGTTATCTTACAAACTTTCTGATGTTGAAGACATTTTATGCATTTATACAGATGCCCAGAATTTTAGTGTATCTCTCCTATAAAAACACGAAGCATTTTTGCACAGTTTCTGTTCATTCTCAGTAAAATCAGACACATTTTGCTTTTCAAATCTCAAATCTTGTTCCAAGCATTTTAAACAGTCTGATTGTATGGAAGTGGGCTGTATTAATTGCAAATAGGCTAGACATCTGTTCACTGAATCTGAATAACTTCTTATGTCTGAATATTGTTTATCAGTGTTTTACATAAAATCATGATGATTTTCTAGGAGGAAGATGGATTCTGAGGGAAATCATGACCTGAAGTTAGAAGTATTTTTTTATAATAAGTTTAATTTTCAACAAGGTCCAGATCCATTTTCATCCCTGTGAAGTTCCTGCTGTGCTGTAATTCAGAATAGAGAGAGACAAAATCCATTTTGCCCTCCATAGCAGTGCTGGTCCAGCATCACAATCCATAAGCGTGGCTGGCTGCTGGCACAGCACCACTGTGTGGCACTTTGTTTGCTTTATTAGCAGAATGTGCCATGGAACTAAAGGAGAGCATCACCAGCTTATCCTTAATATGGCAAAATCATTTAAATCCTTTATTTATGTTAACTTTTTACCGTGCACTATTGCAATTAGGTTTGATTAATGAAAGGCAAATTCCAGCCCCTTATGTTAAGATGAGGAGGAAAAAAAAAGAGGAAAAAATTCCTTGTAAAGAACTAATTAGTACGTTTGTTTATTTAGACTCTAATAGCTTAATTGCATCCTATCTTGCTATTTACAAATAGGCATCATTAAAGAATAATGAGCATGTGAGGGAAAGTGCAGCACTGATACAGCAGCAGATGAGACAGGGAAAAGAAACAGAGCTGAAGGTTCTGGGAGGGGAGTTTGATTTATGTAGTGAATACAAAACCTTCTTTTCCAGTATATATAAATAGGATTTCCAGCCATTCTAGTGATTAGTAAGATAGATGTAGGAGTGGGAGGAAAGGCTTCTGGCTGGCAGTTCCAGGAGGAGCAGGTGCCTGGCCTTTTGCTGGGAGTGTGTACAGCTTGGTTGCATCTCTGCTTTGATGTTGCCTTGTTCTTCCTTGAAAGGTGACTAAAAACCTCGTACAAACTCGTGGTCCTTTCTGTACTAGCAGGGAGGTACCCTGTTAACTGAAAGTAATGTTGTCTTTCTTTTAGCTCTGCAATGCAGAGCATCTGCAGATCAGATCAGCAGCAAATTCCCTGGGATGCTGAGGGGAAATCTGGAGCTCTGGGAGTGCTCTGCGAAGTGCTGGCGCTTGGTGTTGTCAGCACACTTTCTCCTAATATTAAACTTTCAGATAAATCTGAGGAAAGAATGTTTGTTAATGCATTTTTAAAACCATTTATAAAAGGCCCTTTCATTTGCTATCCTTTCCAATGAAGAGGCAAAATGAAGGGGTGGGAATTCCACCACAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGAAGGGGTGTGTTGCAAGCTATTTCTTCCAGGCAGAATTCTGGCATGGCAAATGGGTTTTGATGCTTTTCATTTTGCGGATTTATTTTGGCCCTGACACTGACTCATTTGGAAAGGTGTCTCTTTCTTCTCCAGTTGGTGAGCTGTGCTAACTGGGAACGTTCTTAGCAGCCTCACAAGAAATTATCTGAAGCATTTTCACTGATTATTCTGCTTCCCCTCCCCCAGTCTTGGCATACAGCATCTGTCATCTGCTCTTTGAGAGTTATCTTAGCGATAGACAAAATATTTTTAAAACTGGGATATTTCAAGATTTTTATTTTCTGTATTTTTGTCAGAAAAGCTGCATAATATTGCAGATTTCAATCAGCTGCCTGTCCTACCTTCGTCTGGTGCCTGCCGATTGAGGAAGCAGGGGCATTACGAATAACTTCACTGCCTGAATTCAGTGCACTCCAGTGAAAAACGAGTGAGAAGAGCATTGTTTTTACACAGACCAAAACAGAAGCTGCAGAAGTATTTAACTCGCAGCTGTTCCATTTTCAGCTCACAGAACTGTGGGGCATATTTTTTCATTCATATTAATTGAATTTTAAAGTGACCTTGTACACGTATTGATTTGAATTAAAATCTTCCACATCAAGGACAAGTTGGCATATATCCTACAGGCAAAATATTAAAAAGCCAAGTGCTGTCTTAACAGGGTATCGACAGAAGAGGTTGCAATTTAATGGAGGAAGGTGGCTTAGAAAGGAAATTGTTGCCTTTTTGTCGCAATGGAAAGGTATCCTTTTGGTGTAATAGAGGAGCTTCGTGCAGCTGCTATCTGTGGCAGTGCAGGGGGGCGTTATGTCCATTGGAGCAGGGAGAGCCTTGGCCTCCAGCACAGCACCCTGTGCACCCCGAGTTCACAGCAGAACTCTCTGATTGCTTTTTTTTTATCAGCCATTGGGTTTTTGTTCCCTTCCTTCAGGTGATCTGTGGGGATGCAGCTCTGCGACCAAAGGTGTAAGCTATACTCCGTACACATGTCTTCAGTTGCCTGCGTTCAGCAGGCATCAGAGGGAAACCGTTGGCTGGAAAACGTGATCTATAAAATGTGGTCAGTGTGAACACAAACATTACATTCTGAAAATGGTTATGAGTCTTGATCATTAGAGGGAAAAATAAAAGGTCCCTCATTTCTTGCGTACGGCAGAGAATGTGCTTTATCCTTTAAAGTGCTGTGGGGCATCCTTTCGGCTCCCACGTGTAACTGCATCCTCCAGCCTGATGATGGTTCATGCTTTGTACTGCTTGCCTCGGTGTTTCAGCACTGTTAAAAATGATGAACTGTACGTTCTCGGAGCTGTGCTTCTTCTACGTTTCTTGAGTCTGTTCTCATGTGCTATTCCTGTTATTCCTTTCGATACAACCCTGCAACAATTGTCTGAAGGTCCTGGTTTCTCTTCTAACCTCTCTAAAACCTATAGGAATTCCATGCCAACACAACAGCAGCACAGAATAGGGGAGTGTTCTGTTTCAGTGCCAGACTGCTAGTTCACTGCTAATACTGCTGTGTGAGTAGAGATTCCAACGCAGCACCTCACTCAGGGAACTCACTCTGAAGCATGCATTAAGGATGGCTGTACACAGCTCTCCCACATATGGGGGATGAGGGAAGGCAGCAACCATGCTTGTTTGGCATTCAACAAGTGGGTGATGTGAGCTGCTGTCCTGTTCCAGCCTGCAAAATTTGGCCTTTCAGTTTTGCATGATGGATAATAGCTGCGATCTGGTAACAGCGACAGCTTCTGAAAGTGAAAAGTGAATTGCTGGAAGGCTGTGAAAACGGATGACCTGTAAAAGGGCAGTGAGCTGATGCAGAAGCATGGCGAGAGGATTTGTGCAGGTCAGCCTGGTGGGGAGGTCTGGGGGCAGTGGGATGTGTGTGCAAGCAAGCTGGAGTGCCAAACATGGGACTTTTCAGTTTGTTACGTGTGACTACTAACTCTGAGGATTTTCAGGAACATCCCACACAGGCTGCAGAGCAACTTCATCCAAGTGGTTTTTTTTTTTTTCAGCCTGGCAGCAATGTGAGATATGAACACAGAACGCAGGGGAAAGAAGTGAGCATCCACTGAAGTGTGTGAAGGGAATGAAAATAGCAAATATTACATATAGAGCCGTGTCTGGGAGTTTGTAGGACTGTCTTTTTGCTCTTCATTAAGAAGCTCTCTGTTTTGTTTAAGATTTCTTCTTTTTCTCCTCTGAATTTTGCTGTGTGTAATTGCAGTGTGAGATGGAAGCAGTTCTCTCAGTAGGGATTTATCCAAGAAAACTGCTGCTCTTACTGAGGTAGAAAAAAGTAAGTAGAAAAGCCAATTAACTCTGAATGTGCCGACGACTTTTTTCAGAGCATCTCCAGTTTCTCATCTTGTTTCTAATTAACGATGCCATTATGGCAAGGTAGTTCTTCTGATTCCAGCAGATGATCAGCATCATAGAGCAGCGACATCTGAGGCTGTGTTTTTAACGTAGTTGTTACAGTGCTGAAGTTCCTCTGCTTCTTTCTGCTTCACTTGCAGAGACCAACTTGGTGGTCTTATAGAATATCCCAGTAAGTACCACCTTCAGGCCTAAATTCACAGCAACTGAGACCTTCATAGGGTTGCCTGAGAAGGCTGAGTAGTTTCATACATGTTCATGAACTCCCAGCGTGATGGAAGAAGGTGGGAATCAGGAAGAGCTATTTGTGCTGTGGGTATAGCTCAGGCCTTCCTGCAGGCTACCCTGCGTCTGCAACATGTTTTTTTCTTCAAAAATTTCTTATGGCTTGCTTTTCTCCTTTATGTTTTTGCAAAATCATGCCTAGCAGCTTGTCATCTTGAAGGCTGTCATTGACTTCTTTTTCCCTTCTCTTTCCCTTGATCTGTCTGTTGCTGTCAACTCATTCTTCCCTCTTGCTCTAACTCTTCTGGCCCGGAGTTGCTTTTTCCACATCCCACACCAAAGAGTTGTCATCAGTTCCTTTTAGGATCTGTAACTGTCCTCTGTATAGTTCTTTAAAATGGAAAAGTGGTATTTACAGCAGTTTGGGAGGCTGTTCTAAAAAGCTCTGTGCTGCCACTCCATTCCTACCCCCGTTTCCCATCCCAGCCCTCTGTCCTCCAGCACAGTCCATCAGCGTTGACGTCGCCTGTTTTCTGCTGTCTGTGTTCCAGCACTTCATCCAGTTAAGATGAACACATGCGAGAACAATCATCATCTTCCTGCTGACATCGGCAGATAAATCCACTCCCAGAGAAATCAGTCACCCTGCGTCTTCATTGATTTGTTGTATATTTTTCCTTTTTAATTTCTGCTAACGACTGCTGCCTCCCACCTTGTTTCAACATGAGTAACTGGTGCTGACTAAGAGAATAAAGAGCACTTTTGTGCTTTTGGGGATGGGTGAAAACTGCAATATTTGTACAACAGAACGCAAAGCCAAAACCCTTATTAGATGTTTTAACAGGATTGAAGTCTAAGTTCATCTTTGAATGTTCAATTGATTTTTAGATTAAAACATCTTCATTATTGTTTTTTTGTCAATACTGTAATTTAGGTTTATTTCTGCTGTTATACTGTGACAGACCAAGATGCTGCTTTTATTCCTTGCCCTTTGCTATTACAACAAAAGAAAATTAAACCTTCAAGATGTAAGATTTTTACTATTGTAATTGCTATTCTCCCACTTTGTTTTCTTGTAAGTATTTTTACTTTCTTATTGGACCTGAAGTGTTTTACAGTGAACCCATGGCATGCTGTTAAAAGCTAGCATTAGGAGAGTCTGAGTCTTCTTTCAAATTATTTTTCCCTAAATGGACTCACATTGGAGAATATGGAATACATGGAAACTAATCACATTTGCTCATTGTTTTTGACAAGTTATTGAGTTGTGTTGTGTATAAAATGGAGAGAGTTGCTTGGCTGTGTTGTGTCTGCACAAGGGAATTCTATGAATCCATACATTTTCAGTTGCAAATGAATGTTTGCTCTGCACTTTATGGTCTGTCTCTTCCTCATAATGTGCACAGTGTTTTCAGATCTTTTATTTTGTTCTGTCTATAAAATATTGAAAACTGAGATTGCATCAGCTTAAGCTGTTAACGTGATGGTCTTGTGAATTCAGGCACCATTAGCTCTCCTTCACCTTGTTTGTCCTCTTGTTCTTGATAG
Seq C2 exon
GTTACCTTAGGAAAAGTGTTAAAAGTGATAGTGGTGATGCGGAGCCTCTTCATTGACCGGACCATAGTAAAAGGATACAATGAAAACGTCTATACTGACGATGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003683:ENSGALT00000005834:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF115713=Med27=PU(3.4=8.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]