GgaINT0125320 @ galGal3
Intron Retention
Gene
ENSGALG00000002546 | Q90689_CHICK
Description
NA
Coordinates
chr17:8236670-8240548:+
Coord C1 exon
chr17:8236670-8236738
Coord A exon
chr17:8236739-8240314
Coord C2 exon
chr17:8240315-8240548
Length
3576 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
CCCTTCTCCACTTCCCATAGCTC
3' ss Score
8.9
Exon sequences
Seq C1 exon
GCTAGAATTACTTCTTGGCCAAAGGAAAACCCAGGCTCCTGGTTCAGTGAATTCAAGCGCGGTAAACTG
Seq A exon
GTAAGATGCATCTCAGTGCTTTCAGTTTTCTTTAACCCGTGTCGTATTTTACAGAGTAAAATGGCTCGTTGGCCCAAAGAACAGCCTTCCACATGGTATAGTCAATACAAGCGGGGGTCTTTGGTAAGTGGCTAACCTTGGCCCTCTAGTCTGAATCAGAGCACGTCATCCGCTTTGGTATGGCCAGACCTGTTGCACTCTGCATGCTCGACTAATCGCCATCACAAGTTGCAGTTAAAACATTTAAGGTGGAACTACTTAAGGTGAAAAAGAAGCAGAACCTCACAGGGATGCTTTTGGTGACCAGCTCTGTGCCCTGCAGGAGGGTGCTGCTGCCCCATGAGCTGCTCCCATCGTAGCAAGGGCAAAACCGAGTGTCCCTGTGCTGCTGTCCCACAGGGAAAGCAGCCTTGTCCTGCAAGCCCTTGTGTGATGCCTCAACCTGGAGCTGAGCTCTGTGCTGCTGCACCACTTCCTTGGGGGTAGCCCAGACTGGGTTGGTGAGTCTGCACATAACCAGGTCAGGTTGTCCCCAGAGGAAGAATCTCATCTCCTTGCTGGAGTTGAGCCATGCTGGGGGCTCCCACACCATTCCCAGAGCATGGGAGAGGTGAAGTCATTGATTCAAAGGAAGAGATTTCAAGCCATGTGTGCACCAAGCCTGATGGCCTGGGATTGGATGTAGTCACGATTGAGGTTTATTTTTAAGGGAGAAAAACTGCTGTGAGTCAAACAGTGTTTGATATCAGCAAGCAAACAAGGCATCAACATGTTAAAAAATAAAAGAAAAGAGAAGCAGCTCCAGTATTTTGTCCTGTTGCAGAACATTCGTGTTGTGCACAGATCGCCCTCCCACCGAGCCCCTCATCAAATGAGTAGCACGAGGCAGCTGTCCTCCAGCAACAGAAATCTCCCACGTGTGTATCAGTTCCTACAGCATTGGCAGGGTGCACATCGTGAGCTCGATCAGATCAGGAGGATGAGGGATGGAGGAAATGCTCAGCAGATGTGAGCAGCTGGAGGTGCTGAGATCCCCACTGCCCAAGGCAGAGGTTTCCTGCAGAACATGCAAACTTCCACCTTAAAGGGCAAACAAAGGAGGATGCTGACTTGTTTCCCTCAGCCACATTTCATTGCCACTAAACACGTAAGCTCTGATTCTGCCCACAAGAAGGATATGGCTTCTGCAGCTTTTCAACACCATCCAACAAGGCCGCAAAGCCAAGGCTTCAGCCTCGTAGCTCCTTGGAGGGCAACTACTCATAGCTTAATTACAGAGCACTTCATCAATTAATATTACAAGTACATCCATCTCTGCATCTTCTGTGCCTTTTTTTCCTTTTATTTTTTTTCCAGCCTGTTTGTTGGCTACTTTAGAGGCTGAATGGGGCACCCTACAGCTTGGGGCCCATTTTTTAAATAGGAATTTCAGTGCCACTTGGTGCCCTTTGTTCCATCTTTCTGCATTGCTATTCTCTTGCCTTTTACCTGTCCCACGTTTCCCATTTGCAAAAAAAAAAAAAAAAAAAAGCCACCAGCACATAGAAGACCTCCCACAGCAAGTCCCAAAACTGTAAAGTTTGATTAAAAAAAGAAAGAAAGCAGTATTTCATACCAGTCAGTATTTGGAACTCTGAGACTGGTAAGCTGGGGTGGTGTTCGCCTGGATGTGAGTTGGTTGAATGCTGTTTGTAGGTTGGCAGGATGGCTGTGGGTGCCCCTCAGGTTGGCAGGGCTGCTCTGCTCACCCCAGAGCCTTTGTGCCCAGCCTGGAGCCATGGCACTGCCTACGACACATCCCATAATAATCTCTGCTTACGCAAGGTGTGCCAGTGCTCGCCTTTCTTCTGGGGACACCCAAAGTAAGATGGATGGAGTAAACGGGGAATACAAAGAAACCGTTTTGTTTTGATGCTTCCCCACCATCATTAATCAATGACACAGAGTGTGTGGAGTTAATTTCCCAGCGTTCCTCATGATGCAGCCAGACTGCATTTAGAGGGATAAGAGGGCTGCAGATGTTTTCTTTTGGCCTCTGCTTTCCTCCTGTGTGCATTACGATCGCATGTAATTCCCTGTAGCTCTAACAAGACCTGCCACCCATCCATCCTGTTCTCCCTCACTGCCATATGGCATCTGCCACAGGCAAATACTACAGCACAGAGAAGGGGGAAAGGATTGATTTCTTTTGCAAAACCAACCAGCTTTGTGCACACAGCCAGCTCCCAGTGGGTCCGGCTGTAAACCTCGTGCAGAAGCAGAACAACTGAGCCCCCTTAGCCCAAACCAAGCATCGATTTGAAATAGGAATACACAGAAAAGTAACTCTTGCAGATCGATGGGCAGTGCCACGTGTCACCGAGCGTGCACTGAGCGCTCAGCATTTCACGTCCCCATCCTTCTACGTCCTGGTGGTTTCCTGCTCTCTCTCCCCCTGGCATGCGTGGCTCTCTCATGGTCAGTCATGTTTAACTCTCAGGAGGACAGTGCGACAGTATCCTGACAACCGGTTGGTATATTTTATTTATCTTTATCACCTTTTTACTCAGAACTTTGTTGTCTGGTTGTGAATCTCTTCTACTGTTTGCAGCCCTCACCGTGATCTGATGCTTCACCGTATCTGGAAGGACGTTGTGCTGTTTGTGTGTATTTTTCCCCCAGTCATTTCTTAAAGAAGTCAACTGTCTGTAGAGGGCAGTTTGAAGAGCTGCTCCGGTGGCTTTGCTGTGGCTGGAGGTGCCACCTCAAGTGCAGTCAGTCCGTAATGTGCTCTGAGTGGTCCTATGGGTGGTTCCGTGTTGGGGGGCACAAGGGAAAGTCATGGAAAGGCCTGAATCCTGAGGAGTGGAGGGGCCTTCCATAACTTGTGTTCTGCAGAAATAGATTTCCAGAAACCGTTCTCCCTTGAGGGAGAAAAAGAACCTGACGTGCAGGACAGAGCAAATCCCTGCGCAGGTGCAGCTGTGCAGCTGTCAGTAGGAGCAGGATTTCTGCAGGAGAGGTTGCAAGGATAGCTTAAAATCCCAGTGTGGTTGTATCCAGGAAAGATGAATGGGAAACACCCCTGTGTGTGCAGAACAAAATACCTGCAGAGGTCAGATAACTGTGTCAAACAGGGCAGAGAAATAAAGCTCCAGACCCTTCCATAAATCTTCGTTCTCCTCAAAAGCTGGAGAAATATGTTCAGTGCTGGCTTTATGCCTGGAGATATACATCCCCACATTTGTGCAGTGTTGTGCCACTTTGCAGCTGGGGCTGAAATCCCCATTCCTTTCTCCTCCTTCTGCCCTTGGTTAGCTTTGGTTTTATTTCTTAGCTTACCAACAGGTTGTAGGCAGCAACACAAATAAACTGCCCCTGGCAGCAGGAGGACCAGAGCATCTCTGTGCCATGCAGCATGGCAGGAGCAGGACCTGCACCCTGTTGGGATGGGGAGACCCAGCCTTGGAGCAGAGGGCAGAGTGCCCATGCACATGGGGATAAGGACGGATGGGAAATCTGGTGGCCCTTGGAGCTCCCTAAATGCATTGCTTTGCCCCTCACTGCCCAGTGTTTCCCCTTCTCCACTTCCCATAG
Seq C2 exon
CTCTCCTATGTGGATTCGGATGGGAACCCCATCGGAGTGGTACAGATGACGTTCCTCAGGCTGCTGAGTGCCTCGGCCCACCAGAACATCACTTACAACTGCTACCAGTCCGTAGCCTGGCACGATGCCACCACTGACAGCTACGACAAGGCCATCCGCTTCCTGGGCTCCAACGACGAGGAGATGTCCTACGACAACAACCCCTACATCCGAGCTGCATTCGATGGCTGCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002546:ENSGALT00000039035:64
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0141013=COLFI=FE(10.4=100)
A:
NA
C2:
PF0141013=COLFI=FE(36.3=100)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]