GgaINT0125896 @ galGal4
Intron Retention
Gene
ENSGALG00000000847 | GARNL3
Description
GTPase-activating Rap/Ran-GAP domain-like protein 3 [Source:RefSeq peptide;Acc:NP_001025847]
Coordinates
chr17:10416195-10417722:+
Coord C1 exon
chr17:10416195-10416269
Coord A exon
chr17:10416270-10417622
Coord C2 exon
chr17:10417623-10417722
Length
1353 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
GTCTCCCAATTCTTTTTCAGAAT
3' ss Score
9.82
Exon sequences
Seq C1 exon
CTTATATCTAGTGATGCTGATGGAGCTATTCAAAGAGCTGGACGATTCCGAGTGGAAAATGGCTCTTCTGATGAG
Seq A exon
GTAAGTGGTTAAACATATGTAAAGCTGAAAAAATAATTTAGTTTCTCAACTGAAATATGTATTTATAGTCAATTACTAGGAGAGCAGACTTGAAAAATGCTGAGTAATATGAAAATGGAGGAATCCAAGAGGAGGGAAATGGTGTTTGTTACCCCTAAGACTAGCTTAATTATTCATTCAAGAATACACAATCTCAACAATTTAATTTTTAAGGAAAATAGATGATATTTCCTTTTGCTGTAACACTTTGCTCAGCTTATGAAGTTAGGAGAAAAAATACCCATTTTATCCTTTGCAGTGTCTAGTTCACCATGTTTGTGGGTTTTTTTTTCCTAAGTTTTTCCTTGGTGTGATGAAGGTATAGCACCTTTTTTTTTTTTTTTTCCTAGATGTGTTTAGGCAGCTATGCTTATTTCTAAATATGAGATGAAGAAGCTGAGTGGAGTCTGAAAGAGTCATTCACCTTAAGTTCTCCAGCAACACTTAAATTTCTCCTTAAATAATTTGGGAGGGGAAAGGTTATCTTCCTTCATGAATCATTTTCAACTGTAAATAACACCTTAATATTTAAAGAAAGAAAAGTTCATAGTCTTGAAGTGTATGTAAGGTCTTGGTAAACTTATGTTGAACTAATATAAGTCATAAATAATTAGTTTGCATCAGCATTGGGTGCAGCATTAAAGTGGCTATTCTGCGTTGATTCCCTCTTGGGTCATGTTCTGTAGATTGGCTTTTCAGTTCAGTTTCATGCAATTCAAAAGCTCTTTATCTTTTATTTTAGACAGATTCTCTGAGTGATTGCTGAATGCCACATGATGAATTGGCTTGGAGAATAGCTTTTTCCTTGTGAATGCTCTTAGTGGAAAAGGAGTGAGGAATGCTTGGAAATTTGACTAGTCAATCCAGAAACAATACCAAAGAATTTCCACAGCATTATCTGCTCCAGTTAGGAGTCCTTGAGGAATATTTTGGGAAGAAAGGAGAAAATGAAACTTGTGAGGACAGAAATCTGTTTGTTTATTCATTTACTCTTAAATTTTTAAAAACATAGGTCTTCAAATTCAATATTAAAAGATCTGCTTTTCAGTGGAATGCTAAGGTATTACCTACCACAGTGGTATGAAGGGAGAAAACTGCAGTTATTTAAAAAACAGAGAGAAGAAAAATGTTTTAATTTCAACTACACAACAACTGACTTCAGAATAATTCTTGGCTTTTAGAAAAAAAGAAAAAAAGGTGTACAACTAGAATTCTTCCAGTGGATTGACCATGCTTGCTTGACTTTTTCAACTGTTATGTTCTCAATTTTTTAAATACAGCATTTGACTGGACTGTCTCCCAATTCTTTTTCAG
Seq C2 exon
AATACAGGCTACACTCCAGGTACATGGCACAGGACGGATGTACATTTGGAAAATCCAGAGTATTATACAAGATGGTATTTCAAATATTTTTTAGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000847:ENSGALT00000001243:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=NA C2=0.216
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]