GgaINT0125905 @ galGal3
Intron Retention
Gene
ENSGALG00000000847 | GARNL3
Description
NA
Coordinates
chr17:11154468-11156832:+
Coord C1 exon
chr17:11154468-11154576
Coord A exon
chr17:11154577-11156786
Coord C2 exon
chr17:11156787-11156832
Length
2210 bp
Sequences
Splice sites
5' ss Seq
CACGTATCT
5' ss Score
2.77
3' ss Seq
TTTCCTTAACTGGATGACAGATA
3' ss Score
4.8
Exon sequences
Seq C1 exon
GTAGAAAGGAAGCGGCATATTGGAAATGACATTGTCACTATCGTATTTCAGGAAGGAGAAGAGACTGCTCCAGCATTCAAGCCATCCATGATTCGCTCTCATTTTACAC
Seq A exon
GTATCTTTTTTCTTTATATTTTCTACTTTTTTATTGTCTTTATTTATTTTTAATACTGCTTCTAATTTTACCCTAACTTCCTATTTGCTGTTTACAGGGTGCATGCTTGCATTCTTTACTTCTGACTACTTGACTAGTAGTCTGTAAGTCTCCCACATAATTTTTGTATCAAATTGCTTAGATGAGTACTTCTATGTCAGATTACTTTTTATTAAAACTTCTATTTTCATCATTCCACAAATTCAATTTCATGAAATTTCATAAATTTTCATAAAGTATAAACTCAAAATTATATTTCTGTAACTGATGTTAAGATGGCATTTACTACTGAATATCACCTCATAATATTCAGATGCTGTTTATTTTTGGTATTTATATATTTTGGTTCCCTGTATCTAAAGCCTTTCAGACCTTAAACCACCTGTCTTCCAGATTTGTTGCAGCATGTATTTTTCAAACTTCTGTTTGAAAACATTGTGAAGACAATGTAGTTCCAAAAACCTGCTGTCAATTCCTGCAGACTGTCAGGGGATCATACCAGGTGACCTATATATTCCATTCTTTTAGACCAGGTTGAATGGAACATGTAATTAAAGAAGAAAAAGTTTATTCATATGCATGTTATGTTGAAAAGTCTTTAAAAGTGATCACAGCTTCAATTTCTAAACCTAGTTGTCAGGTTTTGCTCACTGTTGTTGGAGTTTTTCTTGCTAATGTTTCTTTTTAAATTGATAATAATCTCATTTACTCTAAATGGAAGAAGCATCTGGAGCAAAAGAAATTCCACATTTAAAACAAAAACAAACAAAATCCTTTAGTTAGCAGAGCAACCCAAAATTGTTAATAATAAAAGTTTACCAAGTCAATATACCTCTTTATCAGAGTGTCAGCATTTGTAAACAAAGATGTAATTCTTCCTTTATTGATGTTAAGAAGACAAGACTTATTATGTAATTAATTAACCCTGCTCTTTTTACTTTGTAACAAACATTTCAAGATTCAACAACCTCGTGGTCATGGGGTATATGTTGCCAGAGCCTCTTATGGCAGACTGGCATTCCTGTTTTCTGTTTTCTCTTGTTCTGTAGTGATTTGTGTGGGCTGGGTACCAGGCTTACTGCATGCTGAAGTAGTGAACTTCGCTTATGAATATTTTCATGAGAGAGACATTCTTGGTTGTTGACGTGGTGCCTCTCCCCACAGAGGAGATCAGTACATCATGGCTTTACTTCGTATGGATTTGTTTGTTTTTAGAGTAATTTCTGGATGGGGAAGGATTGTGAGGACATTCATAGACATTGTTGTGTCATTATATAACTTGGAAATGTTTTTGAGGAAGCACAAAGACTTGCATGATTGCCATGCACACATAACAGGAAAGTAGATTAGGGTAGAACCTGCAACAGAAAGATCTGCTTGCCAGCCTTGTTGTTGTTGAGGAAAACAGCTTAAAGATTATGCTGAATAATTGGGTTGATGAACGGAAAACACTGAGCAGAATATTAAAGATGTGAGGTATTATTCTCATAATACCAGAAAATTGGTCCTGGAAAACTTTATGAAATGTCTGGCTTCTGACTGTTTTCTGTTTCCCTGAGGTACATGACCCTCCCATTGAGAGGCTTTACCGAAAAATGTACCTACTGCCTGCTATTTCAGGGAGTTGTTTTTCTTTTACCTGAATTAAGTGCTTTCATAATGAGTCAGAGGGATGGATGTGCCCTATATCTGTATGAACTTGGTTACGTCATTTGGGAAGATCTTCACCCTTCTGTAGTGGCAGCTGAAGACTAGGCAATACACTCTTAAGCATCTTAAATGCACATTTGAGTATTCTCTGTTTATATCTTCCTCTCTATTTGTCTTATAACCCTTCTAGCAGAACTATTTTGTGGCATTCTTTTTTTCTCAGTGGGAGTTTCAACATAAGTGAATCTGGGAATCATTGTGGTGGTGTTTTTTTTTTTTTTTAATCACCTAAATGAACTTTTAATCTCAAGTCTATCAAACACATGTGAAACACAAAACTATGTAGCACACTTTTGGCTTTATGAAATGTTGTGTTTATGGTAGTAGCTCTATTTTTAAAATGGTTCAAATGCAATTATACTTGACTGTTATTAAATCTGCTATCTGCTGCAGGGAAAAAAAATATTAAAATGCATGTGAACTTCATTAGTAATGGATTAATTTCCTTAACTGGATGACAG
Seq C2 exon
ATATTTTTGCCTTAGTGAGATATAATAAGCAGAATGATAGTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000847:ENSGALT00000038633:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214510=Rap_GAP=FE(18.9=100)
A:
NA
C2:
PF0214510=Rap_GAP=FE(7.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]