GgaINT0125905 @ galGal4
Intron Retention
Gene
ENSGALG00000000847 | GARNL3
Description
GTPase-activating Rap/Ran-GAP domain-like protein 3 [Source:RefSeq peptide;Acc:NP_001025847]
Coordinates
chr17:10423925-10426289:+
Coord C1 exon
chr17:10423925-10424033
Coord A exon
chr17:10424034-10426243
Coord C2 exon
chr17:10426244-10426289
Length
2210 bp
Sequences
Splice sites
5' ss Seq
CACGTATCT
5' ss Score
2.77
3' ss Seq
TTTCCTTAACTGGATGACAGATA
3' ss Score
4.8
Exon sequences
Seq C1 exon
GTAGAAAGGAAGCGGCATATTGGAAATGACATTGTCACTATCGTATTTCAGGAAGGAGAAGAGACTGCTCCAGCATTCAAGCCATCCATGATTCGCTCTCATTTTACAC
Seq A exon
GTATCTTTTTTCTTTATATTTTCTACTTTTTTATTGTCTTTATTTATTTTTAATACTGCTTCTAATTTTACCCTAACTTCCTATTTGCTGTTTACAGGGTGCATGCTTGCATTCTTTACTTCTGACTACTTGACTAGTAGTCTGTAAGTCTCCCACATAATTTTTGTATCAAATTGCTTAGATGAGTACTTCTATGTCAGATTACTTTTTATTAAAACTTCTATTTTCATCATTCCACAAATTCAATTTCATGAAATTTCATAAATTTTCATAAAGTATAAACTCAAAATTATATTTCTGTAACTGATGTTAAGATGGCATTTACTACTGAATATCACCTCATAATATTCAGATGCTGTTTATTTTTGGTATTTATATATTTTGGTTCCCTGTATCTAAAGCCTTTCAGACCTTAAACCACCTGTCTTCCAGATTTGTTGCAGCATGTATTTTTCAAACTTCTGTTTGAAAACATTGTGAAGACAATGTAGTTCCAAAAACCTGCTGTCAATTCCTGCAGACTGTCAGGGGATCATACCAGGTGACCTATATATTCCATTCTTTTAGACCAGGTTGAATGGAACATGTAATTAAAGAAGAAAAAGTTTATTCATATGCATGTTATGTTGAAAAGTCTTTAAAAGTGATCACAGCTTCAATTTCTAAACCTAGTTGTCAGGTTTTGCTCACTGTTGTTGGAGTTTTTCTTGCTAATGTTTCTTTTTAAATTGATAATAATCTCATTTACTCTAAATGGAAGAAGCATCTGGAGCAAAAGAAATTCCACATTTAAAACAAAAACAAACAAAATCCTTTAGTTAGCAGAGCAACCCAAAATTGTTAATAATAAAAGTTTACCAAGTCAATATACCTCTTTATCAGAGTGTCAGCATTTGTAAACAAAGATGTAATTCTTCCTTTATTGATGTTAAGAAGACAAGACTTATTATGTAATTAATTAACCCTGCTCTTTTTACTTTGTAACAAACATTTCAAGATTCAACAACCTCGTGGTCATGGGGTATATGTTGCCAGAGCCTCTTATGGCAGACTGGCATTCCTGTTTTCTGTTTTCTCTTGTTCTGTAGTGATTTGTGTGGGCTGGGTACCAGGCTTACTGCATGCTGAAGTAGTGAACTTCGCTTATGAATATTTTCATGAGAGAGACATTCTTGGTTGTTGACGTGGTGCCTCTCCCCACAGAGGAGATCAGTACATCATGGCTTTACTTCGTATGGATTTGTTTGTTTTTAGAGTAATTTCTGGATGGGGAAGGATTGTGAGGACATTCATAGACATTGTTGTGTCATTATATAACTTGGAAATGTTTTTGAGGAAGCACAAAGACTTGCATGATTGCCATGCACACATAACAGGAAAGTAGATTAGGGTAGAACCTGCAACAGAAAGATCTGCTTGCCAGCCTTGTTGTTGTTGAGGAAAACAGCTTAAAGATTATGCTGAATAATTGGGTTGATGAACGGAAAACACTGAGCAGAATATTAAAGATGTGAGGTATTATTCTCATAATACCAGAAAATTGGTCCTGGAAAACTTTATGAAATGTCTGGCTTCTGACTGTTTTCTGTTTCCCTGAGGTACATGACCCTCCCATTGAGAGGCTTTACCGAAAAATGTACCTACTGCCTGCTATTTCAGGGAGTTGTTTTTCTTTTACCTGAATTAAGTGCTTTCATAATGAGTCAGAGGGATGGATGTGCCCTATATCTGTATGAACTTGGTTACGTCATTTGGGAAGATCTTCACCCTTCTGTAGTGGCAGCTGAAGACTAGGCAATACACTCTTAAGCATCTTAAATGCACATTTGAGTATTCTCTGTTTATATCTTCCTCTCTATTTGTCTTATAACCCTTCTAGCAGAACTATTTTGTGGCATTCTTTTTTTCTCAGTGGGAGTTTCAACATAAGTGAATCTGGGAATCATTGTGGTGGTGTTTTTTTTTTTTTTTAATCACCTAAATGAACTTTTAATCTCAAGTCTATCAAACACATGTGAAACACAAAACTATGTAGCACACTTTTGGCTTTATGAAATGTTGTGTTTATGGTAGTAGCTCTATTTTTAAAATGGTTCAAATGCAATTATACTTGACTGTTATTAAATCTGCTATCTGCTGCAGGGAAAAAAAATATTAAAATGCATGTGAACTTCATTAGTAATGGATTAATTTCCTTAACTGGATGACAG
Seq C2 exon
ATATTTTTGCCTTAGTGAGATATAATAAGCAGAATGATAGTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000847:ENSGALT00000001243:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214510=Rap_GAP=FE(19.1=100)
A:
NA
C2:
PF0214510=Rap_GAP=FE(8.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]