GgaINT0125916 @ galGal4
Intron Retention
Gene
ENSGALG00000000847 | GARNL3
Description
GTPase-activating Rap/Ran-GAP domain-like protein 3 [Source:RefSeq peptide;Acc:NP_001025847]
Coordinates
chr17:10437097-10439280:+
Coord C1 exon
chr17:10437097-10437163
Coord A exon
chr17:10437164-10439172
Coord C2 exon
chr17:10439173-10439280
Length
2009 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
GGCTAACTTTTTTTAAACAGATG
3' ss Score
6.98
Exon sequences
Seq C1 exon
GTTAATTTTGTTGCAGCTATTGATGTATATGAAGATGGTGAAGCTGGTCTACTGTTATGTTATAACT
Seq A exon
GTAAGTATCTAGGGAAGACTGAAAATGATAGGATTTCAATCTGTGTGTGGAATTCTTTTTGCATTGTAGTCCAGATCTGTGTTTTAAAGTAAGTTTCAGAGTTTCACGGGTAGTATTTCAGAATATGTTCTTTTCGACTTAAATACGCACTAGGCGGACTAGAAATTGAAGTACTATTTTATTGGGTATTCTGAGTTAGACTTACGATAGATATTACTTCCTTACTCACAAAAGTCCTATACCTTCAGATTTACCTCATTCTTTACCTAGTTAAACACTGGATGTTTCCAGGACGCGTGTAGCATTTTGCCTGTTTTCTTCTTTGTACTTTTGCATTTTTCTTTTTTCTTCTGCACGCTTCTTTGCACTGTCACATTTTTTCATTGTAATTCTCTCAATCTCATTTTATAAAATGGTCTCAAATATAACACACATGATCTTTTCTGCAGCACTTATACAGTTTTGCTTTTAATCCTCTTTAAAATATAACTTACGGGTATGAAACAGCCTTTATGATGCAGTACACAGAAGGACAAAACACAGCCTTCTCTATTTCAGGCTTTGTCTCCTACCTTCCTTTTCAAAGTGAGCATTGATGGAAACAGAATAAATACACCTAAATTCTAGTACTGGCTTTTAGTTTGGTATTGCAGGGAAAGTATTTCTTAAGAGTAACTTCCTCTGTAACACTCTCTGAGGCCTCATTGGTTCTCCTAGGTCATCATATCCTAACTGGTTCTAGTTCACTTAGCACTGCTTCAGAACTAAAAGGCTCTACGACAGTGCGTGATGAATTCCCATACCTGTACTTCTGCGCAGATCAGTTCCACTCTAATAGACTTACTACTGAGCCAAAGCTAATAAACTTAGTTGATGCTAAAGGTACTTCAGGATCCTAAGATCCTAAAGCCTGATGCACAGTCTTGCAGCTTCTTGAATTCCTATTTCTAGTACATTATCATAGAGAAACCTACTTCCGGTCTTTAGAGAATTTTTACAATTAAGAAAAGATCATCATGGAACAAATATGAAAACACATGGTTTGACAGTGTTCTAAGTTTGTATTTCAAAAAAGGCCTGTGATACTTTTCTGGTTATACACTTAGATTCAGTCTAAAGACATAAATTACAGAAAAAAAAATCAAATCGTAAGATGTCCTGTGTTGGAAGGGACCCACAAGAATCATCAAATCATCAATTCAATTCTTGAAATAGAATTTTGCGTAAAAAACTTGAAAGGAACTGGTAGGAGCAAGTGTATGAGATGCTCACAGATGTTTACCTGGAGCCTCCAGTGCATTCATATGAACTAGTAAAAATAAAAAGATGATTGCAATTCTTTCTCATCATTAAGCATTCTTTTTATTTGCTGACATGACTTCTCATTTTAAAGGATGTTTTATCAGCACTAGGGAGAGTGTTTAGAGAAAAAAATCTGATAGTGGAAGATTAAATTGCTCATTATCTAGATCTTTCAAATTAAAACATTTAAAATTGCATTCCAAGTAGCCAGTGTTCTTATCTGACTCATAAGAAGACTGTTAGTTTCAGTGCATGTACAGTAGCTAAGAGGTTCACAACTTACATGACTAATGAAATCTTGGTGTCTGTAGTATCCTATGTGTATTACAGTCCTCAGAATACATGAACTAGCATATGGCTGCTTGAATGGCAGTTCTTACAGACAGAGGGGTACAGCTCTGCCGACATGGCTTTCAGAAATGTTCTTGCCTATTTCTCTACCATAAACAAGGTAAGGAGCTGATGGTTGTTGAAACAGAATACCACTTACCTTGTGAAACATGATGACTTATCAAGATGTAGCTCTTTTATATTTATCTTTCAAAAGAAAGCTCATTTTCCTTATCTGTTATCTGTTTAGATACAGAGAGGCTTCTACACAGAAGTTTGAGTATTATCTATGTATCATCCAAACTTAAAAATGTCAACTTTATAGGTAGATTTCACTTAATTTACATGTAAGGTGATGGCTAACTTTTTTTAAACAG
Seq C2 exon
ATGTTTGCCAGTATAGAAAGGTGTATCCTTTTAATGGAGGTTCTCCACTGATCCAGCCATCAGCTTATGATTTTCACTTTAGCTGGAATCAAGTTCCTTATGCTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000847:ENSGALT00000001243:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(7.3=100)
A:
NA
C2:
PF0078017=CNH=FE(11.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]