GgaINT0126130 @ galGal4
Intron Retention
Gene
ENSGALG00000001910 | SNAPC4
Description
small nuclear RNA activating complex, polypeptide 4, 190kDa [Source:HGNC Symbol;Acc:HGNC:11137]
Coordinates
chr17:7898866-7899798:+
Coord C1 exon
chr17:7898866-7898960
Coord A exon
chr17:7898961-7899703
Coord C2 exon
chr17:7899704-7899798
Length
743 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
TTAATGTTTTTCATTTGAAGGTA
3' ss Score
9.97
Exon sequences
Seq C1 exon
ATGCTGTTGGCTGCAGTTGAGAAGTATGGAGAGCGTGACTGGTATAAAATTCGGACAGAAGTGCCAGGGAGAAGTGATGCTCAGTGCAGTGACAG
Seq A exon
GTAGGTACAGTGCCTGTAACAGCTGTGCCTTCATGCCTGTTGTCCAGAGCCAAGCTGCAACTCATTTTACAAACGTTTGCTTTGCTTACAACAGGGTCATCTTAAAGACTGTCATGAATGTGGTTATGGTCTAAATACAATTCCCACGGGTCTCTAAAGGCAGTCTCTAAGCACAGCCTTTGTTTCCACCTGAGTTTGCCTCTGTAGTTAGAGAAGGTAGAGCTGACATTTGAGTTTAGCAGGGAGAGTGATGCTCTGTTGCCTGTGGCACATCATTCCTTTGGTATAGCTGCTGGTGGCAGAGCAGTAGTTGGAGGGGCTGTTGTCCTAAGCAGGGCAAAGGGATCCTGAAGTGTGAGTGCATGCAGGGAGGAAAGGTGGTCATTCATGTATGGGCTGCACAAACAGTCTGGTCAGTCACTTCCTGCAGCTGACACCGGTGTTGTGAGAGGTGCTGAGGTATCTTCAGCATTGAACCCAGCTTCAGGAGACCACATGCAGCATGTTCTCATTTCAGTGATCCATTTTACAACCGCTCATTACAGTTTTTAACCATGTAGCTTGATACTCCTGTGATCAAAGAGATTGTAAGTGTGCTGTGTTACAGGAACAGTAATGGGTGCCTTAGAAAAGGGGAAGATCTGATTAAGACTGCTGGTTGTGTTCAGCCTCAGATTATGCAGCTGATCAGTACCATATAAATGAAGTGAAACATTCCTTACTTTAATGTTTTTCATTTGAAG
Seq C2 exon
GTACTTAAAAGCATTGCACCGTGATGTAAAGAAAGGCAAATGGAGTTTAAAGGAAGAAGAACAACTAATTGATCTGGTGCAGAAGCACGGCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001910:ENSGALT00000002951:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF139211=Myb_DNA-bind_6=FE(50.8=100)
A:
NA
C2:
PF139211=Myb_DNA-bind_6=PD(36.1=66.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]