RnoINT0140852 @ rn6
Intron Retention
Gene
ENSRNOG00000018845 | Snapc4
Description
small nuclear RNA activating complex, polypeptide 4 [Source:RGD Symbol;Acc:1309048]
Coordinates
chr3:3816301-3818666:-
Coord C1 exon
chr3:3818572-3818666
Coord A exon
chr3:3816396-3818571
Coord C2 exon
chr3:3816301-3816395
Length
2176 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
CTGTTTGCACACAATTTTAGCTA
3' ss Score
6.39
Exon sequences
Seq C1 exon
AAATTGCTTCAAGCTGTTGCCAAGTATGGGGCGCAGGACTGGTTTAAAATCCGGGAAGAGGTGCCAGGTAGGAGCGATGCCCAGTGCAGAGACCG
Seq A exon
GTGAGTTGCCCGCACTGGCTGAGGGAGCGACTTGCCTGAGTCACATTTCTGTAGGCAGGCTAGGTGACAGTGGCCCAGAGTGATATGTCCACAGGGGCTTTTCGAACTGGGGCTGGCACTGTTAGGAAGCAGGACTTCGATAATTCTGTTGTCTACCAGGAATTAAATGCTAGTGGTGACTCTTGCAGATGTCCTCCCAAACTGCTAGTGGGAAGGGCTCCTTCCAGAGAGGATCTCTCCTCTCTACTTTCTGTCAGTGATTTGTTCAGACGTATTTCAGTTTACCTTGTTAATGTAAACCATACTGATCACCCTACAAAGAATTTACACTCAGCAGCCCTGCAGAATCCCATTCAAAACAGGCAAAGGTCTTCAGCAAACTTGTCCCAGAGATGCACAAGTAGCCAAAGGCCATGAAAAGATGCTCAGTCATGTATTTCAGGAATGCAAGTCAGAATCACACTGAAGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACCGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTAGCTCACAACCATCTGTAATGAGATCTGATGCCCTCTTCAATGGTAGATTACTGTAGCTGTCTGTCTGAAGACAGCTACAGTGTACTTATATATAAAAATAAATCTTTTTAAAAAAAAAAAACTAAACTAAAACATTTCATACGTGTAGGGAAATTGTTTTAACCTTCTTTTTTTTTTTTTTTTTTTCTTTTTTTCGGAACTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCTGGGAAATTGTTTTAAAACACAGAAACACAGTAACAAGTATTCCTAGGGCACAGATCACAGCCTCCACAAAAACCAGACCACGGGGCAGCATTGTGCTAGGCCAGAATAGTCTATACCTGCAAAACTCATGTCCCAGGAGTCCCAGGAGTTTGTATATTGGACAAGAATGTTTGTAGAACATCCTTCATTGTCAGGAAGAAAGTGTGGGGTACAAATTTGGAGTCCTGGCATTTGCAGGGAAAGTCATTCTTTTTTTTTTTTTTTTTTTTTTTCGGTTCTTTTTTTCGGAGCTGGGGACCAAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCGGGAAAGTCATTCTTATAGATGCTTTGGATAAGCCTTGAGAACATTCTGAATATTTGGGCAAATATTTATAAAGATGCCCAAGGAATATCCTTGGGTCAGGAATGACTCTTGCGTTTGGCTTTTGGAAGAACTGCCAGACTTTGTGCAAAAAGTCTCTATTTTGTGCTCTCCCAAGCAGCATGTGAGGCTTGTGGCTGCACCCTTCCAAGTGCTGTGGATGGACTCTCTAAGTGTCACCTCACAACAGCCCCTCATGGCTGACTGAGGAGCCTCATTGCTTGTGCCTGCTGGCTTCCTACATGTATACATCTCCTTGGAAAAACATCTGTCAGGATCATTCCCTGGTTTAAATTACCTGTCTTTGGATTACTGACTTTTACATGTTCAGAGTGCAAGTCCCTAGTCAGATGCAGTATCTGCAGACACTCTAGTCAATGGCTCTCCTCTCCTTTCTTTACAAGAGGCCTTAAAGTGGTGGTTCTCAACCTGTGGGTCTCAAACCCTTGGTGGGGAGGGTGTTAGATGACCCTTTCATCGGCATCACCATCAGAAACACATAATTACATTATAATTCATAACAGTAGCAAAATTAGTTATGAAGTAGCAATAAAAATAGTTTTATGGTTAGGGATCACCATGTCATGAGGAACTGTGTTAAAGGGTCACAGTGTCAGGAAGGTGGAGAACCCCACCTTAAAGCAGACAGTTTTGAAAAGTGCCGGTGGGCAGTGGTGGCTCATGACTAATCCCAGCACTCAGGAAGCAGAGGCAGGAGGATCTCTGTAGGCTAGACTGGTCTACACAACAGTTTAAACAGACAGAGCTATACAGAGAAACCCTGTCTCAAGGTAATTTTTGATGAAGTCCATCTTGTTTTTGTTTTTGTTTTTGTTTTTGCTTGTTGTGACATTATCCTAAGAAATCACTTAGAAGGCTGGAGAGCAGTGAAGGGAGTCTTAGTATCTAAAGTGTCCCTGTTTGCACACAATTTTAG
Seq C2 exon
CTACATCAGAAGATTACATTTCAGTTTGAAGAAGGGACGGTGGGATGCAAAAGAAGAACAACAGCTGATCCAGTTAATAGAAAAATATGGCGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018845:ENSRNOT00000061682:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF139211=Myb_DNA-bind_6=FE(50.8=100)
A:
NA
C2:
PF139211=Myb_DNA-bind_6=PD(36.1=66.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]