GgaINT0126527 @ galGal4
Intron Retention
Gene
ENSGALG00000000977 | MAPKAP1
Description
Target of rapamycin complex 2 subunit MAPKAP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9W6S3]
Coordinates
chr17:9651623-9656680:-
Coord C1 exon
chr17:9656540-9656680
Coord A exon
chr17:9651761-9656539
Coord C2 exon
chr17:9651623-9651760
Length
4779 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAAT
5' ss Score
6.62
3' ss Seq
TCTATTCTTTCTCATCTCAGGTA
3' ss Score
9.42
Exon sequences
Seq C1 exon
GTTCGAGAGGAGAGGAGATCTCAGAGGAGGACCCTCAGATCGACATCGCCACGGTGCAGGACATGCTCAGCAGCCACCACTACAAGTCCTTCAAAGTCAGCATGATCCATAGGCTTCGATTCACCACTGATGTTCAGTTAG
Seq A exon
GTAAATCAGTCCCTACTAAAGTGCTGTGGAGAATTGAATGTTTCAAACCTTTGGCCATATCTAATAGCTAACTGTCCATTTCAGATGTTTTTAAGGCATTCATTATCACGTTGGTCAGTTTTATTGTGGAGTGCATCACTTGAAAGTGTTGCTAGCATTTCCGCAGTTAAAAGAAATGCTTTCCATTGAAAATAATTTGGTATTTTTAGTATCCACCATCAGCTAGCACGTTTCTTCTGAAGGAAGGCCATTGGTTAATGACCCCATCTCTTTTTTATTTTTTTACTGAAGGATTTTAGCCACCAAGTCGAAATTTGGAGTGAAACGAAATACAGCTAGCGTCCCCTAAAGGTGTTGTGTTGTCCTTCTTTGCTTTCTGAATGCTTTTGAAAACCTGAAGGCCGAGGGATGACAGAATCCTGAATTATCAAAGCCCCAGTACTGTTTTAAAATGATTGAATGGCTTTTTAACTCTGTGTTTAAATTGTGGAAATTTGATTAATGATGGACTGGTGGGTGACCTGTGACATTCCTGCAAATACCGTCCATAAAGAAATGATTCAGCAGTAAAATATGAGGTGCTGTGGTGTTTACAAAACACATTTATTCTTGGGAATTCAGCAGAATTGTTAAATTGAAGCGCTAGCATTCTCTGTACTGTCGTCTTTACAGTCTCTTCGCTCTTCCATCCTTAAGCACATTATAAAAGCATGTCTCTAAAATTTGTACAGGAGAGGTTTTCTTGGTGGTTTTGAGCTGTCTTGTTAAGGAAGGATTGATAGGCTGGTGCTGGAGCAGGACAGCACTGGGCACGTTCTCTGCTTCTGAGCAAACTGTCGGGGAGTGAGAGTTTGCTTCCAGTGAAGTTTGACTCCCTGTGTCTGGAAGCTGTCTGAAATGCGAGACCGAAGAGGTCACAACAGATAGTGCAGATAAACGGGTAAGGGAGAATAGCTGTTAGATGGAACAAATGGCGTAACTTGTTTCGTCGCGATGGAGCTGACCCTGCCTGGTAGTGTAAGGACCATACCATTTCCCTCCTATAACGCTCTGTGAACGTGTATGCTTTCTGATGGCAGCACACTGACAATGGGATTTTTACATTGTGATTATTGTTTGAAAATCCAGGAGGGCTCAGTGCGGTGTTCACAGTCCGGGCCAACAGACAGCACCAAAGCCTCCAAATGAAGTCAAAATAATTGTATAGTGCTGTTTTTTTTTTCTACTGAATGTCTCTGTGATTAAAGGAGCACTGCTGATAGAGCAAGCACCGAGGTGCTATTTGCAGTAACGATGCCGAGTGCTAATGTGTCAGTCATCTCCGAGTAACGGACTGCTCCATGCAGTCTGAAGTATTAAAAAAAGGCTAATTCTCTCTTAATCTCTAATGAGTGGCTGTGGGTATGGAGGAATCCTTCACTGGCTTAGCGATCGGTCAGCAGTTGGTCACCAAGACTTTTCTCTGTAGTGTTTTTATGTGCCATTGGTTTTATGGAGCAGCCACAGCAAAGTGACGGCTTTTCCGGAGATTCTGAAGCCACAGCATTGCTCCTAATGGGCAGCATCAGTGGTTTGATGGCAGCACAGGTCGGCCACCCACCTAGCTGGAAAGTGGTGTGCTGACTGCATGGAAATGTCTGCGTGGCTCTGGGGAGAGCCCCAGTTCCATTGGCTGAATGTGGAAGGATGTGTAAGTACATGCAAATACTTACTTTGTTTGAACAGATCCCATACTGCACCTTATTTCACTTGCGTAGGGCAGGTAGCCAAAGTGTAAGCTGTGTCTGTGGATTGGTGCTTGCACAGTGGTCCTTTCTGAAATGTTTTGAGCTGTCTGAAAAGTGGTCACCGAATCTGACAGAAGATTTACTGAAAGTATGGGGGTCAGCTCGGTGATTTTACATTGTGCGTGGTTCTTCTTGGCAGAAAAAAGAGATGCCAATGGGGAGGGGAGGAATGAGCACCTCGTGAGTGTGGTTTTGTTAGGGCTGGAAGCAATAGCCCCGGCAGCTTAAAGGCTTCGTTTGTGTGTCTCAGCTAATGGTAGATTATAATGCACGTACAGCAGTGCTCCCAACGTTTTCAGAAAGGTGCAGTCATGTTGTGAAGGCGTAAGACAAATCTGCTTGTGTTCCATGTTAGCAAAACGAAGAGAAGCGCATTGTCGTGGAAAGCTGCTGCCAAAAAGCATTTCAGTGGGGGGGGCATCGCAGCGCCAGCAAAGGGGGTGAGGGCAGAGCGGTGTTACGGAGTTCCACAGCAGAGACGTTTCTTCTGCTAAATTGAATGAATTAAAAAAATCCTAGAAGAGGTATTTTTGCTTATTTTCTGAGTATAACAAATTTGTGCTGCGATAGAGACCGTAGAAGCCACATACATAATACTGTTTTGATTTTAGGTTTCAACGTGCACAGATTGCAAGAACAATAACACAAAAAGACAGCATTCTTTGTCAATGTGCTCTTTGGATGTGTGTGAGCTTAAGCCAGTGATGTCGAGATACAGAAATAATGGATGAAGTATACAGCAACAATTTGCAGATAAAAATAATAGAAGTTAAAGTGTATTTTACATGATAAAAAAAAGATGAAAGAGGAGGAAGTCTGTTACATCTGAGACGGTTACAAAATCCCTGCTTGGTGAAGTAGCCTCTGCTGAAAAGATTGATGCAATGGGGAGTGACCTTGGCTTGGAGCAGGAGCTGGTGATGTATGTATGAGCATCTCTCTGCTAAATGGACCCAGATTTGTAGCACTAATATACATGGAAGCCCAGAACCAAACTCAGGATGGCAATAAATCAACAGCCACTTTGGGTGTCATTTCTGGTTTATATTCCACTATTGTTCTATCACTTTAATTCATGTCACTATCATCTGTTCATCTGGAACAGTTTTATATAATTTTCCAGTGGAGTTACCTGACAAATCCTATCAAATTAACAAGGTACGTTAACAATATTGACTGACTGTGAATGCTGAAGTTGCAGGACCATGCTGTGAAATTTTTAAAGGATATTTTCGGGAGTGCCTTCTTCTAAAGGGAGGGCCGGGGAGCACCCACTGCACACAAAGAATCTGCACTTCCGTTTTTAGAACTTGCCTTGACTTTTTTTCAGGGAGAAAATGAGAACTTATGTCTTCAACTTCACGTATTTTGATTAAGCTACAGGAAATACCATTTTGAATAATCGATTACTGTGAAATAACAAAACTGATTTTAATTAATGTGTCCAAAATTGCATTGCAAAACAAAGTGGGCTCCAGACAGAGCGTCAGCCTGCTCCCATTACCTCGTTCTAACAGCCCTTGTATTAATTGGACTCTTGATACGGTGCTTAATTGAAATGTGATATCTTTGATGTGACGTATGCTTAATGACAAAGTGCATTCTTGGATTAATAGAAGCGGGGAGGGAGTTGGTGGCATTGTTACCACCTGTCTCAGCAGCCAGGGGTAAAGTGAAGGTTACCCTGTGTTCAGTGGAAAGGACAGCAGAGAGAAGGCTGCTGCAAGCACACATTGCTTGCTGTGTGTGCTTTCAGTGTAGGTGCAGAAAGCACTGACTGAGGTGATTTGCAAATTCTGCAGCAGTCACTGTGCTTTTAGAAGCATTGTTTTTGAGGGCTGAGACAGTTATGACTGTGACATCCAATGCTTATTCGGTCACACCTCTTAGAGGTTTTATAATCAGTTTCTTTAAGTTTTCTCCTGCTTCAGACAAACCAAATGCAATGTATTCAAAAGCATCATGGCCAAAGCCCTTTAAAAGGTGAGGGTTCTCTGCCATTTTTCCAAGGATGCAAGAGTAAGCTAAAGTGCATTTACTCTTCATCCTCTGCTGCTTCCTTTTTTTGTGCTGTGCCATGAGCTTCACCTGGAAGCCGTGACTTTAAGAGACTGAGCAGTTCATCCCATCCCATCAGCAGACACCAAAGTGAGCTCCTGCCCAGCAGCGCAGCGCAGTGGTGCCGCGATGGAGCCTGCAGTAAATGCAGTGAGCACTGTGGGCAGGCTGCAGCTCCCCATTAGCATCCCACTGCACAAACACTGCTTGCAGAAACTGGGGAGACATGCAGAGGGGTAATAGTGTAGGAATGCTCTACACTCCATCCCCAAAGGTCTGCAGCAGGATGCTGTGCGTGGAGGCACACACCTGTGTGCAGTGGGAACACAGCCCCCACCATCTGGGCCGCTGTGTGGGGCCAGGAGCTCCCCAGCTCCCACTCTGTGCTCACTGCAGCCTCATCAGAGCTGGCTGCGAAGTGCCAGCAGTGTCACAGCACATGGGATCTCTGGGGCTGGGTGCCTTTGTCTGTGGGTATCTGGTTACCACAAAGAGCACTTCTGTAATACTAAAACACGTGTTGTCCTTGTGTAGAGTATGTCGTATGTATGCTGCCCAGGAGATGTAGTAGTGACGTGTGATGGTGTCTCTCACATATAATAGTGACGACTGACAGTGTATCTTCATATACATCTTGCAGTTCATGTAGCTGCTGCTTCCAGAACAGCTCTGTGTATGCTGAGAAGAAATCTTCCTGTGATATTTTTTTCTCGTTGGTACGCTTATTTCCCAGCAAGGCAGGAGAATAAAATACAGATTATCAATGCACTTTGATAATCATTTGCTTTTGGTTTCAAAAGCTCCCATGCTTTCAGAAAGCCCAGAAGGGCGATATACTTTCATCCCATTTAAGATTTATAAAGTGTGTCAAATGGCTGATATGAAATCACTTAAACAGATCACTATTGTGGCTCTCTATTCTTTCTCATCTCAG
Seq C2 exon
GTATTTCTGGAGACAAGGTAGAGATAGACCCTGTTACTAATCAGAAGGCCAGCACTAAGTTTTGGATTAAGCAGAAACCCATTTCAATCGATTCTGAACTCCTCTGTGCCTGTGACCTTGTGGAAGAAAAGAGCCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000977:ENSGALT00000001443:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF054227=SIN1=FE(10.1=100)
A:
NA
C2:
PF054227=SIN1=FE(9.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]