HsaINT0099741 @ hg19
Intron Retention
Gene
ENSG00000119487 | MAPKAP1
Description
mitogen-activated protein kinase associated protein 1 [Source:HGNC Symbol;Acc:18752]
Coordinates
chr9:128230251-128246862:-
Coord C1 exon
chr9:128246722-128246862
Coord A exon
chr9:128230389-128246721
Coord C2 exon
chr9:128230251-128230388
Length
16333 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
GTCCTCACCTTGGCTTACAGGTA
3' ss Score
8.23
Exon sequences
Seq C1 exon
GTTCAAGGGCAGACGGGGTTTTTGAGGAGGATTCGCAAATTGACATAGCCACAGTACAGGATATGCTTAGCAGCCACCATTACAAGTCATTCAAAGTCAGCATGATCCACAGACTGCGATTCACAACCGACGTACAGCTAG
Seq A exon
GTAAGTGTGTGAGCAGGTGATGAGCTAGCTTGTCGTGTCAGCAGTCGGTGTAGAAATGGGGAAAGAAACAACATACAACTTTTATGTGACCTGAATGACTAAAAGTAATTTGTTTTCTGAGAAAATGTTTAAACAATGGAATTTGAAGTACATCCTTTTTCCCACTTGAGTGCTCTGTCTTGTCTTCTTTTTTATGAAGCAGAAGATTAGAAATAGAACTAACTTGAGACTCTTTTCAAACTGATTGACTTCGGTGAAGTTCCATAATTCTTTTCATTCTGTAATTCTCTTGCCTGCTCTCCTTAGAACTGCTTTGTGACGGTGCCACCTGCCTGTTCTTAACTCAGCTAGCTCATTGCTTATTCATTCAGGCCTTTATTCAGGAAGCTTTTTAATGTCTCAGAAGGTATATTTGGATCTTCGTCATATAATTTGGAACTTTCAACTCATATTTGGGATTAATTTGTTCTAATTATGTGCTAAATTTCTGTTTTGACTTAAACCGGAGTAGGAAAAGTGTCATAGTAAGCAACATACTATTAATACATCATCATTATCATCATCATCATCATCATCATGGCTGCCTTTTATAGGTGTCTGCTGTGTATTAGTCACTGTGTTAAGTGCTTTACATGTACTACTTAACTACCTAAAAGGTGGGGTATTTTTACTGTCCCCATCTAACAGAGGGGGTAAATGAGGTACAGAGCAGTCAAGTCTCATGCCCAACTCACACAGTGGTTAGGTGGTGGTGCCAGGAGCAAACCCTGGTCTGACCAACTCAAGTGCACCTGCTCCCTAACAAAGGGTCTCCCATGTGATGGCCGAGGGAGAGGAAGAATGGGTAGTGATGCCAGGCTCACCCAGTCAGGGAGCTGAGCTGCACCCTGTCTCTGCCACACCACCTCTTCCTGCGTCTCCTTTTAACTCTTAGGGTTCATTTATTTTATGTTTCTCACAAATGCTTTGTATGCTTGTCATAATAAAATCTTTTCTAATGTTGGCATTAGTTTGAACCTGGCTAACTCGTAAGAGGCCTCAAAAATCTCCTCACATGTTCCTTTCCAACTTGACTGACAGGAACTTCCAATATGCTGACAATACAGCTTAGTGATTAAGAGATGGGCAAGAGAATCACAAATGGTTTAAATTGTGCTCTATCAATAGACAGCCATGTAACCTTAAGCCAGTGTTTTAATCTTTCTGAGCCTCAATTCTATCCTGCTTGAATGGGAATATCAGTAGTACCAATGACGCAGGGTTGCTATGGGGAATGAGTGAAATCCCACATGTAAAGCACTGAGTACGGGGCCTGCAGTTGTAAACTTCCCTATGTGAGAGCTGTTAGTTGGGAGGCAGTAGAGTGTGGTGCTCAGAGGGCTCACTCAGGAGTCGGAGGCCCAGGTACAAACCCTGCTCGTTTATTAGCTGTATCACCACCGGCAAATGATGCAGAGCCCCAGTTTCCTTATCTGTAAAAACAAAGATAATTTTTCAACTGTGAGGATGAAATGCCGCAGCACATGCAGAGAACTTAGGCACCTGGCCTCTAGCAAGTGCCTAGTGAGCATTAGCTGCTAAGATGATGGTGATTCTAGCAGGCTGATCAGATGAGACAGCACTCAGTAACTTCGAACCAAAGCAGACCCCACCTTTTTTTCCCCTCTGCATTAAGTCCTCACCTAATGTCATCCAAAGGTTCTTGGAAACTGTAACTTTAAGTGAAATGACATATAACAAAACTCATTTTTTCCCTTATCAACATTATAACAAAACGACATTGAACAAAATTATGTACATCATTTCACTTAAAGTTGAAGTTTCCAAGAACCTATGAATGACAATAAGTGAGGACTTAACTGTAGCTCTTCTTCCTCATAAAAACCTTAAATATCTAAAGTGGTGAAATTGCTTATTTAGTGTTGATTCTTAAATCATAAAGTCATTCAGTGTTGTTCCTCCTGGGGATGTTTTTCCTACTGTATTTCAGAAATAAGACTGATCAAAAAGAAGCCAGTTCTCAAAAATAAATAAAAGAGTACATACTATATGATTCTATTATATGACATTCACAAATACAAGGAAATAATCTTATGTAAGAAGTAAAGATACTGGTTATTCCAGGTAAGATGGTTGTAGTGGCTGGAGAAGGGCTTCTGGGAAGCTGGAAAGGGTCTGTTTTCTGATCTGGGTGCTGATTACATGGGTCTGTAGACTTTGTGGAAAAGTCATGGTATATATACTCATGATTTGTGCACTTTTTCTGTGTGTACACTTTCTTTCTTCTTCTTCTTTTTTTTTTTTTTTTTTTAGACAGAGTTTTGCTTTTGTTGCCCAGGCTGGAGTGCAATGACTTGATCTCGGCTCACTGCAGCCCCTGCCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCCCACCACCATGCCCAGCTAATGTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAACCACCACGCCTGGCCACACTTTCAGTTTATGAAAGTAAGAATGCCACTCAAACATCCAGTTTGTGTTTAGCTGCAGTACTTGCCCAATAGCAAAGGGCCTGCTTTTTCTGAATGGGCCTACTTTTAAGAAGCCCAATAAGTAGGCTGGGTGCCATGGCTCACGTCTGTAATCCCAGCACTTTGGGAGACAAAGGTGGGCAGATCACTTGAGCTCAGGAGTTCAGGACCAGCCTGGGCGACATGGTGAGACTCCATCTCTGCAGAAAATACAAAAATAGCCAGGTGTGGTGGTGCCTGCCTGTAGTCCCAGCTACTCAGGAGGCTGCGATGGGAGGATCGCTTGAGTCTGGGAGGTCAAGGCTGCAGTGAGCTGTCATGACGCCATTACACTCCAGCCTGGGCGACAGTGTTAGACTCTGTCTCAAAGGAAAAAAAGAAGCCCAATAAGTAGCCCAACTGTGGTCAAGACAGAGGGTCAAAGCAAGGGCCCAGGTGAGCATCATCAGCAAATCCATCCCCGCTCATTCCCCAGTGTGAAAAGCGCTGCCTTGGAATGATAACCAAGATCATGGGCTTCTTTCCCCACTTTTTTCCAAAGGCAAAAAAGACAAACTTTAATTCATTAGAGCCTGACATGTAAATTATTTCAAAGGAAAAAGTCCACAAAAGGCTTTGTGGGAGGAGCCCAAGCTCTGCAGTCAGTCAGCACTGAGTTTGAATCCCAGCCTTGCCACTTACCTGCAGTGTCACCTGGACAAGTCTTTTCCCTTTTCAATCTTAGTTTTCACCATGTATGAAATGGGGATAATAATGTTTACCTTTTAACATTCTATGAAAGTGTCTGGCCCATAGAAGCATATTCTTTTTTTTTTTTTTTTTTTTTTTTTTCCCCGAAACGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGCAAGCTCGGCTCACTGCAACCTCCTCCTACCGGGTTCACGCCATTCTCCTGCCTCTGCCTCCTGAGTAGCTGGGACTACAGGCGCCTGCCACCACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTAGCCAGGATGGTCTCGATCTCCTGACCTTGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCCATAGAAGCATATTCTAAGCAGTAGCTTATCGTAGTGTTATTATCATTGTCATTATTATTTATTTTGCCTATTGCCCTCTCTCCAGGTCCACCATCTTGAAAGTATTAAACCAGATCACTTAGATCAGGGGGTGGCTCTCCTGGCAAAGTTCCACTTGTGGCCATAATGGAGACTTGTCAGGTAGACATGAATGATGACAGTCATGCAAGTATCTCCCTGGTTGTTGGAAGTGAGGCGACTGGAGGCTGGGGCGTCACTTGTGAATGCTTGGAATGCTTCCAGTGACACACATGGCACCCTCTGGTGTAGAGTCGCATTTCAGAGGGGCTTCTAAAAGAGATGATGTCAGAACATTTGTTTCTGTCCTCAAAGTTCAGTCTTTATCATTATAATCAGAAATTTCATTAATTAGTCGTAAGGAATTTTGTGACAATCAGACAGACTGCCCATGAGTATTATATCATGCACTGAATAAATAAACCCATTTTCCCATCCCACGTAGATTACACAGGTATGTAATTGAAGACCCTCTCTCCCTCCTTACAAAGCAGATATCACCCTCACATTCTAACAACAACAAAAACCCACACCTAGCAATCCAGAAATTCTTTCTTCCTGAGACGTTCTACTGCCAAGAGTAGGGAGGCAAACAGCACACCCTGTATGAGTATTCAAGTGAGCAGCTGGATTTTGAGACGAGTAAATAATTTATTTTATTTCACCTGACTAGCCAGGTGCTTCAGGTCCTTCCTGACACTGATGGATGGTCACCTCCACCTGTCCATCCTGTGTCAATCAGAACAGAGATTTCACTTGGCCCCTGTGGCAACATCTTTTAAGTGGAAAGTAAGTGTGTGGCATTTGCCCAGCATCCCTGCTGATTCCACAGAAAACCACTCATCCATGCTGAATTAGTGGTAGTAAGAGCTGCAGCTGAGGATCAGAATCCCCAGGCTCTGCAGTGCCACCCAGTTGCTTGTCTTCTGATGGGGTGGTAGTGGCCTCTGTTCCAGTTGTTTCTGAGAAAGTCAGGGGATGAGAGACTCAAATTTTGACCTGCAAGACCCAAACTTAAGTCGATTTTCCACCAGACTTTTTTTTTTTTTTTTGAGATGGAGTTTCGCTCTTGTTGCCCAGGCTGGAGTGCAATGGTACAGTCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCAATTCTTCTGCCTCAGCCTCCCAAGTAGCTGGGATTATAGGCATGCACCACCACGCTCAACTAATTTTTGTGTTTTTAGTAGAGACGGGGTTTCCCCGTGTTGGTCAGGCTGGTCTCGAACTCTTGACCTCAGGTGACCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCCGGCCTCCACCAGACTTTTCTATGACCGAAAAACCCCATTAATGAAACATATGACACAGCTCTGGTCTTTTAAAATAATAGTAATGAGAAATAGAATTTTTACAAAGCAGTTATTATCAAGTGCTTACTGTGTGCCAAGCACTTTGCTAATTGTTCTCTTTGCATGCGCTGGCGCCTGAAATCGAAGCACTCTTATTAGATAGTACTGATTTTATCACCATTTTTTATATGATGAAACTGGGGTGTAGGAAAAATCTAGTAAGTAATCAAGCCGGAATAAGAATCCAAGACTGTCTGAGGTTGAGTCCTGAGCCTAACTGCTCTGCCTTACATGCGAATCATTGTGCTAAATCTCTGTGGAACTATGACAACTTACAATACACCAAGAGCTTTCTCCCTGATAACCTCATCTAATCTACACAGCACATTGATATTGTTGTTCCCACTTCATGACTGGGAAAACTGAGGCTTGGAGGAGTTTGGAAGAACGTGGTTTATGTAAACCACTGTGTTGAGAGGTACCTAGCTGTTAGTACCAACTCTCCCACACCTCAGTCATCAGATATACGGAGACTTCCAGCAGAATTGAGGCAGAAACTCAGTCCCATACGCCAGACCCAATCTGTCATACCACAGGTGCCAATCCACAGGTGTCATTAATAATTCACCCCCAGACTGGGCAGGATGGCTCAGATCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGAGGATTGCTAGAAGCCAGGAATTCAAGACCAGTCTGGACAACATGACAAAACCCTGTCTCTACAAAACATTTAAAAACCTTAGCTGGGTGTGGTGGCGCATACCTGTGGTCCTAGCTACTTAGGAGGCTGAGGCAGGAGGATCCCTTGAGCCCAGGAGTTCAAAGCTGCATTGAGCTAGGATCGTGCCATTGTACTCCAGCTTGAGTAACAAAGCAAGACCCTGTCTCTAAATTTATATATATAAAGAAAAAATAACTCAACTGCACAACGGAAGTGATTACTTCTAGTTGGCCAGTTCCTAAACTTGTGCATATTCCTGCTCTTCTCCCGCCCCTAGTATCTGGAGATGAATGTCCACGTACTGTGATACCCTCCTCCTCTTTATTTTAGATGTTGTTTATCAGCCACTGCGCTTCCTCCCTCTGGGCCCGGACCTAACCTCAGAATTTGTTCCAACACAGTCCTATAAGCAACCCCTACCCATCAATTGAAGGTAATTCTTAAATTGAAATATCTTTGCCATTCCTGCTCTACCAGCCCAGAATCTTACCAAAGTCATCATTCCAAACCATTCCTGTATTTCTCTAAAACATTCTTGGAATATTTCATCTTGTCTGCTTTCCCTCTGTCAGTCCTAAAAAGTACAGATGTCCTTCAAGTGTAGCTTTACTTGAGATTCTACCAAGTTGAGGTTATTTCCATTAACTTGGTCTTCCATATACCTGATCCTGTGTGCCTAACCACTTGAGGGAGGTTGCACACTGAGATATGTGCCACCCAAACGGGCTGGTAGGGGGAAGTAAGTTAGGGGAACATTGAAACAGAACGGGTCAAGCGGAGAATGCAGCCACAATCTAAGAAACCCACAGTATATTATCAATAAGTATTTGTTGGCTGGCTGGCAGAAGCTAAATTACAATGCACCAGCCAAAGGAAAGCACAGAAACCAATGCAAGAACCATGGCAGACAGGGCCAAGACATCCCCACAGTGAACACCTCTTATATGCAGAGCACCTCGGGGCAGTGGGTCTGACCCTGAACATATATCAGAGTCACCCAGTCCCTGGCCTCATCCCAGGCCTGCTGGCTCAATATCTCCCCTAGATTGTGGTGTTTAGGGGACACAAACTCACAGTATTGAAAGGACTTTCTTACCCCTTATCTCTTTGTCCAAGCTTGTTTTTACTGACTGGGCAGGTCAACCTGGTTTTTCTGATGCAGTCTCACGCTGAGAAGTGGTTTGATATTTGCACCACTTGTACTCACTTGGTTTGTTTGCCTCATTTATCAGTGTAGACCGTTCCCATGTCACCGAAGGGATCTGTTACTGAACACGTAAGATACCATGAATTCCATCCTATCAGCATCGCATCTATAACCTAATAAAATAATTCTGTATAAGATATACAGAGTCTGTATAGGATTTATAGATAAATGATAGAAAATGACTTCTACCAAAAGGTTCCATGGTTACTTCCATTATCTTTTCATAAAACTGTCCAGTATGTATAATCATAAGACTTGTGATTATGGTAGTTCTTTATGAAAATATCAAGTACAATACCACATGTCCTAGAGAAGGCAAAAAGGTTTCGTCTCATCAGCTGGCTCCAGTCAAGTTTATAACGGCTGCCCAGAGCATTATGCTGAGGCAGCATCTCCAGCTGTGTCTGAGGGCAACATAAAGAAACTCTGTGATTGATTAGAAATGTCTGCCCTGGGCCTGAGCATGATGACAGGCAGCATATTTGCCATTTCTTGTCTTCCCTGCCTTGTCTTTCCTACCGCAGTTATTATTTAACCCACTAGTCAATAACCACAGGCCGGCACTCAAAGGAAGACTTTATTATGGTGTTATTTTTAAGTATACAACATGCAAACTTAAGAAACACGGTAACAGCACAATAGTGAGTGAAAGCAGCAGCGGTGGCCTGGACTGCCTCACTCCTCAGGCACACTCTCAGGCTAAACATGGTTCTGGGTGGCCACATGAATAAAACATTTTCCCTTGTTAGTTTCCAGTGGGGTACCTGTGGAGTACAGTTCAAGTAATCACATAATCTGAACATGCGTGTTCTTAGGAAGTGGATTGATCTTCCATGTTTCCATTTCACTTTGCCGTTGAACACTAAGGAGGTGCCCCTCTCCATTCCAAGACACAATCAGGAGGAGGCGTGCGTCACATTTAACTCAAATCCCTGGGTCCGTTCAGTAATTTGAAGTTGGCAATTCTGATATTAAATGATTGTTCAGTCCCTATTGTGACAGCATTTCCTGAACCAAACTTTGGAATTGACTTATACTAATGAACTGATGAGGCAGAGGATGCATGCTATCAAGACTGCCTCCAGAAAACTCCGTTACCACTTTTGCACTAAATGCAGTGATTGGCTTAGGGAAAAATCACCTAACTGGTAATATTGGAAACACTGTGGGCTTTTTCTTAAGGCCTAGCTTCCTCTGGCTCCCTGCTCCCAGAGCCACCCTTTTGAGAATTCCTATGGAGTAACCCAGGGTTATTAATGACAATGTGTCAGGTTCCTCAGGTGGCTGAGAAAGAATTGAGAATTGGAAGAAGTTGAGAAGCACTGGCATGATGGAATTAATGGGAGTCGGATTCATGAGCGTTCATCCAGAGTTCTGTGCTCCTTTAATCACTTCCTCATCTTTGGCACCTGAGCTCCAACAGGGCCTGAACATGGGGAAGATCAGGTTTTCCCCACTCTACAAGTGATACTGTAAATTCTCTTAGGGCCTGCTGCTTCCTAGCTGACATCATAGGCTCACCTGAGGTATCCATTTACTGAGAGAGTAGTTTGGTGATCTAGCTGTCCTAGTGCAGAATCTTTGTAAATGCCTTCTCTGCAGAGAGAACTTAGCACTCATTCAAAGACAAGTCTTTCTGGGATTAAACAGTCCCAGGTCTGATTTCATAAGCTCTGCCCTGGTGCTGTGTCCTGTGCTGACTGCTGCTCTGCGTTCGTTCGTGTCCAGGCCACTCCTTGTTTTGCGTGCCAAGCCTAACAGTCTAGTCAGGTACACTCGGACTTGTCATTGAGTCTCTTACTGACCACATATTGGAATTGGCAGCTTTTAGCTGTGGTTCCCAAACCGTTTCAGAATGGTTAGTCCTTTGAATGAAACCAGTGATCCTGGGGCCTAGAACTCCACTTGATCTCAAGAAAGTAAGGCTCTACTGGGTTTCATTTTAGTTGTGACCTGAAATATGGTTTTGTCATCTATTTTGGGTGCCTTAAATTGCTGGAGACAGCGCTTTTTTATTGTAATGCATTTGATCAGTGTGAATATGCAGTACTCCTGCATGGCAGGTGAGCTGGTCTGTTTAAGCCCTGGCCTGGTAGTATGGGGATATGAATTATGGTTACAGCTCTGTCATTAATGGGTGACATCAGACAAGTCATGTCCCAGCCCTGAGCCTCAATTTTTTCATATGGAGAATGAAAACCCCAGACTAGGTGATCTCTAAGGTCTCATTAAGCCCAAACAGCCTGTGTGTCTGATCTTGTGTGTAAATTCAGACAAGTTTCAAAGACTTCCCTGACTGCTCTGTGGATGCTATCGATTGGCTGTATATATTCAGCAAAATCCACTCTGGCGAAGAGTTGTTCAGTGGCACTCCCTTGGGGGCTTTTCCAGGCTTTCATAGGCTCTCGGTAACCTGAAGACAAGAGGATTGTAGAATTGTGTAAAAAGCTGCTCCAGGATTTAACAGCAGTGGGACTTTTGTAGCCTTAGATTCAAAGCTGTAGGAAATTGATGAATGAACCACAGCTTATGATATCTGAGCAAATGATAACAGGAAATACACTAAGACATGAATTGTTAAATGCCTTAATTTTTGCCAAAGTGGTGTTTTAGCTTTTTTAAGGGGGTATTTTAAGAGTACCATAGGGGAGGTTGTACCTCCCAAGAGTCAAGCAGTCTCCTCTGGGACAATAGGAAACAGCTGGCAAGTCAGAACTCACCAGGCAGCTAGACCTGGACTTGAACCCAAGCTCTCCAGTTTACTAATTTGATTCACCATAGGCTAGTACATTTTACAGAGGAGAATGATCAGGCTCACCAAGGGAGCAGTGACTTTGCCCAGGATAACACCAGTGGGGATGTGCCAGCATAATCAGGGCCTCCAAATTTGTGGCCTGGAGACCCAGTAGGATGAGGATTCCCTAGCACAAAAGTTTCCACATTCCAGATCTGAGAACATTCTTCCTGATTTGAATTGAACTCTTGGAGGTTGTGAGGAGGAGATATGCCCAGTGACACTTGGTGGTGGGAGGTTACTGGGGGGATTTGTGGGGATGAAGGCATTGTCTCCCAAACTGGATCCTGGTGCTCCCAAGACTGGGATGTAGAGAAGGTCCCAGGGAGAATTCTTCTCGCCCTCCAATTCCAGAGCCAGGCAGGTCCTTTATTCACCTCCTTCTCGTGGCTCCCTGAGCTCCCCAGACTCGACCCTCATCACTGAGTCTATGTCACATCCTTAACCCAGTGCCTGACTTCTGATAATAATCATTAGAAGGAGTAATATTCATCGCTAGCTATGTATCAGGCACAATTCCAAGCCCTTGTCATGCCTTATTTCACCTAATCCTCACAACAAGCACTTGAGGTATCTATTATTATGTGTATTATTATCATCTCCGTTTTATAGAAGTTTTTCCCAAGTCACGTAGTTAGGAAGTAGGAAGGCTGACATTTGAACAGAGGACTTTCTGACTCCAGATTTCCTACCCCTAAGCCCCCTCTTTAAATGTAAGATAGGCTAATAGTGCCTTCCTGATTAGAGGTGTTCTAAGCTCTCAATAAGCCTCTGTACACAAAAGGACCTAGTGTGGGGGCTACCCAGAGTGGGCGCTCAGTCTGTGTTAGAAGAAGATGCTACGCGGTGCTAATTTCCTTTTATGGAAATCTTGGTTAGCTAAAGCAGACAAGGGTCTCCTTGTGATAACTCTAAAGGCTTGCACAAATAGTTTCCCCAGAGAGCTGTATACACATTAGAGTTGCGTTTTTGTTTATTTTGAGCTGTCTTGTTAAGGAAGGATTTATATGCTGGCGTTGATGTAGGACAGCAATCAGGCAATGTTTTCTGCCTTTGACAGTTGGTGTGATAGTTTGCTTCCAGTGAAGTTTGACTCACTGTATCTGGAAGCTGTCAGAAGTGGGAGCATGAAAAGGTCATGACGGATGGCTGTGGATAAGTGGTTAGGGGAGGGAGCTGGTAAGGGAGACAAACTGCCTCCCTTGTTTCCAAGAGAAGGGGCTGACCCTGGCTGCTCCCGGCCAGCCCCCGTGCTCTTTTCTTCCCCACCTGCCTGAGCTGGAAAGAAGCCTGCCGGGCTCCAGTTTTGAGAGGGGCACCAGGTTGGGTGTAGTGTAGCTCATGAGCCCTTCCCAGCAGCGCAACCCCTGGCATACCACTAGAACTGCTAGAAGTTCTGTTAAAGAAATTCTGCTAAAAAAAAAAAAAAAAAAGTTCTGCTGAAGAACTGCTAGAAGGAAGCATTCTTTCACTGAGGATCACTTCACCATTATCAAGACTTCAGCATACTTATCCTTCCCCACATTTTAACAGTCGAGAAAGGATACTGAATTCTGAAGTGGAAATCAAAAAGTGTCAGCTTTCAAAGTGATGTTTGTTTTTATTTTTCGTGAAATGTTTATCTTGGAAAAAATACAGAAAAGGAAAGGATATAATTCTACTAACCAGAGTTGGCCACTGGCACCAGTTTTTGGAGCACGTCCTTTTGACATCTTTTTTTATAAATGGTTTTCCTGTCCTTTTCACTTACTATTGTGTTATAAGGATTTTTCTAGTCAAAACTTTTCGTGGTTATCTTGTATTTCATCATTGTTGGATCAACTATTCCTCTATTACTGGCCACTTAAGTTGGAGAAATGTCAATGTAACAAAAGCCAGTTTCTCTTATTTCCTTGGAAATACATTTATAATTTGAATTACTTAAAACAGTGCATACGTGACACTGTAAGGAGTGCCTCTGCCATTCCTTAAATGACTTTACGCAAAAACTTTAGCCGAGGAAATCAAAACTATGCTCGGTGGTCAGAAAGAATATTGATCGGATTTCATGCTCCAATTTGCCATGTATGAACAAAAAATAGATGTGTGCATTTATTGGCATTTGTGAACATTTATTTGTTCCTTGGTGAAAATTGAGAGAGGAGATGGAGGACTGCTTGGGCAGAGCTCCTTATTATTAATACATCTTCTGACACGGCTGAGGCTGTGCAGAGCAGCAGAAAGAACAGGGACTTGAGACCCAGGCAGCTCTGGGTTTGAACAGTGGCTGTTCCACTTAGATGCTCCCTGACCTAGGCAAGCACCTTCCCCTCTCCTGGGATATGTTATATGAAACATTTAGCACAGTTCTTGCAGAATAGTGTAGTGGCTGAGGGGACACATTCTGGAACCAGACTTCCTGAGTTCAAATTGCAGCTTTGCCACTTCTGAGCTGGGTGATCTTAGGCAAGTTACTTGACCTCACTGTGTTTCTGTTTCCTCGTCAGTAGAATAGGATGAACATACTAGCCAACTTCATGAGGTTATTAAGAGATCTGAGTCCATGCACACAGTGGATTTCTAACCATGCTGGCACATTGTTGATGGCAGTTAATGTTAGCTGTTATGTTAATACTGGAGGTGCTCAGTGAATGGTGTCTATAACTGGCGTCATGCCTGTTGGGCCTAAGGAGAAAATTGTACTGAATGATCGCTGGTGCCCGAGCCTGCCGAAGCAGAAACGGCAGTGAGCCTACCAGGGTTGCACCTTTGCTCTTGGCCTAGGCCTTTGCCTTAAGGAGTCTGAGCTACAGGGACCGTGTGTGCAGCAGCCCTCTTCTCCTGGTGCTCTGCTCACAGGGAGACAGTGCTGCTTCTGCCCACAACCCACTCACTCCCCTTAGCATAGAGAAGTGGCAGTGACAAGTGGGGTACTACTCAACCTCCGCACTTGCAACCCCACTAGCCTGGCTTCCACAACCTCTTCCCCCACCCCTCATCACTGCGGCGATGCCCCAGGAACCTCTCTGACTCCCTTCTCCCTCACACCCTGTGTGCAGCCATCTGCCTACTCCTAACTCTTTTGTCTTTAATATGCTCATCCCCACTGCACCCCAGCCGCGACTGTCCCTGCCCCTGGCCTGGGCTGTGGCACCTGCTTCCTCACTGATCTCTCCTCCACCAAGCCAACTCCTCCTTGTAACCAAGAAGACTACCGAGGGCTCCGAAGCCAAGGACAGAGAGGCCTCTGTTTGCCTCCAGGCTGGATTCTGGGCCTCCTTTCTCTTTTCTGCAGTAGGTGTGCACTCTTCCCGGGGGTGCTCAGGAAGAGGGCTGCTCCCGTGGACTGCCTCAGGCCGAGTGCTGACACATGGCGGCAGGAGCAGATAGGGTGCTGCGGTGCTGCCTGCGCTGCCTTAAGAAGCTGAGACTCACACAAGTGTTAAGAGGGTAAGATTATTTAATGTACAAAAGGATTTTTCCCATCAGGAAAGATTCCCCTACAGGTTTCTTTAAATAGTGACTCCTCTAGGCAGGCAAGTGTTTTACAGATCATTAACTACTTGACTGAAAGCCTACAGGGCAGAGAAACTTAAAACTAAAGTGTTGGGAGCCCCTGCCAATTACAGATCAATCTAAAATGAAGATAAAGTAGCTCTGGAACTAGAAGTCAGTGGGAAAATGTGATTCGATTCAGAAAAAAAAAATCTGATTCACATGCAACTTTTTTGGAACACACCGTCTAAATGATATCCCACCTGTCTGCCCATCTTGAGCCTATTGCATTCATCTCCTACATCTTCATCCCCAAGCCCCGGTCTTGGGGTGCCCCTCTGTGAACAGTAACTGCACAATAACCCCAGGAAAGGGCGTCATTGGGAAAGTGTTCTGTGGCTGTGCAGAGCTTAGGCAATTGATGCAGAGATACTGCTGGTAATGGATGAACTATACGGTAACAATTTGCAGATAAAAATAATAGAAGTTAAAGTGTACTTTACATGATAAAAGAAAGATGAAAGAGGACGAGAGTCTGTTACATCTGAGATGGTTACAAAAGTCCTGCTTTGTGAAGTAGGCTCTGTTGAAAAGATTGATGCAATGGGGAGTGACCTTGGCTTGGAGCAGGAGCTGGTGATGTATGTATGAGCATCCCTCTGCTAAATGGACCCAGATTTGTAGCACTAATATACATGGGAGCCCAGAACCAAACTCAGTACGGCAATAAATCAACAGCCACTTTGGGTGTCATTTCTGGTTTATATTCCACTATTGTTCTATCACTTTAATTCATGTCACTATCATCTTTTCATCTGGAACAGTTTTATATAATTTTCCAGTGGAGTTACCTGACAAATCCTATCAAATTAACAAGGTACATTAACAGTATTGACTGACTACAGCTTCAAGAGTTGTAGGGGCATAGAACAAAATTTTAAAACCATGTCTCTGGTGATGATATTTTTCCCCATTCTTTCTGAGAAAAGAATGTGGAGCACGGTTTATTTTCACATAAGAGATATGCATGTTTATTCTGCTCGGCTCATTTTGACTTTTATAAATGTCAAAATAAGAAGAAGAAGGGGAACACACACATGCACACACACACACCCGACAACCATGGCTTCAGTACTTCTTTCAGGGAACTATAGAAATGTCCAGATCTTTAACAATTAATGACCAAATTGGAGGCAAGAGTGTAACTGGGTAGTCGTAATCTATTTTAACTGAAATGTAATAAAATTGGTCTCCTGATACATTCTCACCCTCCTGAAATCATCTAGACCTGAACGTCCAGAGTCAGCTGGACTTACGACATTATGCCTAATTGAAATATGGTGTTCCTGAAATAGGTCTAATGACAAATTCCAGCGTTCGATTAGTAAAAAATACCAATGGTTCATCTTTACCAAAGACCACACGTACTGACCAGGGTACAGCAGCCATCTCTGCATTGTCTCCCCTGGAGGCAGCAGAGGAGCCTCGACTGTAGTCTGTCTGCACACATTCTTCTTCTGCCTTTGTCTAGCTGGTATTTGGGATTTATTTATTCATAAAATAAAATATAAATGTATGGAGCGTGTAGCAGACCTAATCAGTAGGATTTTGTTTGTATTTGTTTTTTTAATTTTAAATTTGCTGTCAGACTGTGTTTGGGGTGTGTGTGTGTTTTATTTTGGGGGGAGGTTAATTGAACTGTTTCTTTTATCTGCTGCTGCTTTTGGCTTACTAAGTTTTCTCACATTTTGTTCAAAAATTTGAGTGTGATTCGTAGGATGAAATATGTTAACTATGTCTTTTCTGTTTCACTTTGTACATTTGGTTATTTTAATTATTTCTTATATCTTCATTTTGCTTTTTTTCACTTTGACCCTGACCTTTAAACTATGGCCTAAAAATTAATTACTTTTAAGGTTCCATATGGGGCCCACTATAGAAGGCATGTTAAAGGTTTTTGTCTCACTTCATGAACAGATTCCTTAATTTTCAGCAAAAGAGGAAAAAGAGCACATCTAGCCTAGGTGGTGTGTGGCGGGCTGAGCATGTACTCCTCTGCAGTACTGAGAAAGCGGTTGCTGTGCATTTCCACACTTATTCCAGGGCCCCTCCCATACCTGGCATTACCTTTGTTCTGCAAACACCTTTATTCCCGGTCACTATACAACGTGTTGTCTTTTAAGCTCTGAAAATAAAATCTGAAGTGCCAGTATTGAACATTCTGGATTCCTGTTGCGTAAAACTCACACCCAGTGCCGAGTCTCGCCCTCAGCAGGGGGGCAATGACCTCTGCAGCCTGAAGCCAGGCTCCAAGACTTGAACTTGGAAGGTTTTATGTAAGGTTTAATCCTCTCGTGACTTCCCTTAAATATAGCTTGGATAATTATTTAGTGTCACAGAAAGGAAGAGTTATTTTATTCTTTTTAGTGTATAAGGTTGTTTCAGATCAGAAGCTGTTCATTGGTAGCTTAGCTGTTTAAACATAGGGATGTTACAGATTTATCTGTCCACCCCAGATCTTCTTAAATGAGAACAACAACTCAGAGCACCAATCAAAACTGTTTTTTAAATAAACCTGATGGTTATTTCATTACAATATAGAGATAATGTACGGCTGTAAATAGCCTCTCTGTGTTGGATCCATGTTATATCTAAGAAGGCTTGTTTCTTAATACCTTCTCATATAGTTTGGGGGGGTTCCCCCACCCTCAACTCACCCACCCAGGAAACCAGACTATGCAACTTGTGTGTGCCATTTGGAGTGTCCTTATGTTTGTCTCAGGAAGCCCGTGGCATTCCCCAAAGCCCTAAGAAAGAGCTCACGTTCATGCAATTTCAGATTTATAAAACAGGTCAAATGATTTCCCTGAAATCACTTACACCTTCTACTTCTTGTGTTTTCTTTTGTGTCCTCACCTTGGCTTACAG
Seq C2 exon
GTATCTCTGGAGACAAAGTAGAGATAGACCCTGTTACGAATCAGAAAGCCAGCACTAAGTTTTGGATTAAGCAGAAACCCATCTCAATCGATTCCGACCTGCTCTGTGCCTGTGACCTTGCTGAAGAGAAAAGCCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119487-MAPKAP1:NM_001006617:9
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=0.005
Domain overlap (PFAM):
C1:
PF054227=SIN1=PD(11.6=10.4),PF054227=SIN1=FE(36.2=100)
A:
NA
C2:
PF054227=SIN1=PD(0.1=0.0),PF054227=SIN1=FE(56.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)