HsaINT0099741 @ hg38
Intron Retention
Gene
ENSG00000119487 | MAPKAP1
Description
mitogen-activated protein kinase associated protein 1 [Source:HGNC Symbol;Acc:HGNC:18752]
Coordinates
chr9:125467972-125471905:-
Coord C1 exon
chr9:125471083-125471905
Coord A exon
chr9:125468110-125471082
Coord C2 exon
chr9:125467972-125468109
Length
2973 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
GTCCTCACCTTGGCTTACAGGTA
3' ss Score
8.23
Exon sequences
Seq C1 exon
GTTAATACTGGAGGTGCTCAGTGAATGGTGTCTATAACTGGCGTCATGCCTGTTGGGCCTAAGGAGAAAATTGTACTGAATGATCGCTGGTGCCCGAGCCTGCCGAAGCAGAAACGGCAGTGAGCCTACCAGGGTTGCACCTTTGCTCTTGGCCTAGGCCTTTGCCTTAAGGAGTCTGAGCTACAGGGACCGTGTGTGCAGCAGCCCTCTTCTCCTGGTGCTCTGCTCACAGGGAGACAGTGCTGCTTCTGCCCACAACCCACTCACTCCCCTTAGCATAGAGAAGTGGCAGTGACAAGTGGGGTACTACTCAACCTCCGCACTTGCAACCCCACTAGCCTGGCTTCCACAACCTCTTCCCCCACCCCTCATCACTGCGGCGATGCCCCAGGAACCTCTCTGACTCCCTTCTCCCTCACACCCTGTGTGCAGCCATCTGCCTACTCCTAACTCTTTTGTCTTTAATATGCTCATCCCCACTGCACCCCAGCCGCGACTGTCCCTGCCCCTGGCCTGGGCTGTGGCACCTGCTTCCTCACTGATCTCTCCTCCACCAAGCCAACTCCTCCTTGTAACCAAGAAGACTACCGAGGGCTCCGAAGCCAAGGACAGAGAGGCCTCTGTTTGCCTCCAGGCTGGATTCTGGGCCTCCTTTCTCTTTTCTGCAGTAGGTGTGCACTCTTCCCGGGGGTGCTCAGGAAGAGGGCTGCTCCCGTGGACTGCCTCAGGCCGAGTGCTGACACATGGCGGCAGGAGCAGATAGGGTGCTGCGGTGCTGCCTGCGCTGCCTTAAGAAGCTGAGACTCACACAAGTGTTAAGAGG
Seq A exon
GTAAGATTATTTAATGTACAAAAGGATTTTTCCCATCAGGAAAGATTCCCCTACAGGTTTCTTTAAATAGTGACTCCTCTAGGCAGGCAAGTGTTTTACAGATCATTAACTACTTGACTGAAAGCCTACAGGGCAGAGAAACTTAAAACTAAAGTGTTGGGAGCCCCTGCCAATTACAGATCAATCTAAAATGAAGATAAAGTAGCTCTGGAACTAGAAGTCAGTGGGAAAATGTGATTCGATTCAGAAAAAAAAAATCTGATTCACATGCAACTTTTTTGGAACACACCGTCTAAATGATATCCCACCTGTCTGCCCATCTTGAGCCTATTGCATTCATCTCCTACATCTTCATCCCCAAGCCCCGGTCTTGGGGTGCCCCTCTGTGAACAGTAACTGCACAATAACCCCAGGAAAGGGCGTCATTGGGAAAGTGTTCTGTGGCTGTGCAGAGCTTAGGCAATTGATGCAGAGATACTGCTGGTAATGGATGAACTATACGGTAACAATTTGCAGATAAAAATAATAGAAGTTAAAGTGTACTTTACATGATAAAAGAAAGATGAAAGAGGACGAGAGTCTGTTACATCTGAGATGGTTACAAAAGTCCTGCTTTGTGAAGTAGGCTCTGTTGAAAAGATTGATGCAATGGGGAGTGACCTTGGCTTGGAGCAGGAGCTGGTGATGTATGTATGAGCATCCCTCTGCTAAATGGACCCAGATTTGTAGCACTAATATACATGGGAGCCCAGAACCAAACTCAGTACGGCAATAAATCAACAGCCACTTTGGGTGTCATTTCTGGTTTATATTCCACTATTGTTCTATCACTTTAATTCATGTCACTATCATCTTTTCATCTGGAACAGTTTTATATAATTTTCCAGTGGAGTTACCTGACAAATCCTATCAAATTAACAAGGTACATTAACAGTATTGACTGACTACAGCTTCAAGAGTTGTAGGGGCATAGAACAAAATTTTAAAACCATGTCTCTGGTGATGATATTTTTCCCCATTCTTTCTGAGAAAAGAATGTGGAGCACGGTTTATTTTCACATAAGAGATATGCATGTTTATTCTGCTCGGCTCATTTTGACTTTTATAAATGTCAAAATAAGAAGAAGAAGGGGAACACACACATGCACACACACACACCCGACAACCATGGCTTCAGTACTTCTTTCAGGGAACTATAGAAATGTCCAGATCTTTAACAATTAATGACCAAATTGGAGGCAAGAGTGTAACTGGGTAGTCGTAATCTATTTTAACTGAAATGTAATAAAATTGGTCTCCTGATACATTCTCACCCTCCTGAAATCATCTAGACCTGAACGTCCAGAGTCAGCTGGACTTACGACATTATGCCTAATTGAAATATGGTGTTCCTGAAATAGGTCTAATGACAAATTCCAGCGTTCGATTAGTAAAAAATACCAATGGTTCATCTTTACCAAAGACCACACGTACTGACCAGGGTACAGCAGCCATCTCTGCATTGTCTCCCCTGGAGGCAGCAGAGGAGCCTCGACTGTAGTCTGTCTGCACACATTCTTCTTCTGCCTTTGTCTAGCTGGTATTTGGGATTTATTTATTCATAAAATAAAATATAAATGTATGGAGCGTGTAGCAGACCTAATCAGTAGGATTTTGTTTGTATTTGTTTTTTTAATTTTAAATTTGCTGTCAGACTGTGTTTGGGGTGTGTGTGTGTTTTATTTTGGGGGGAGGTTAATTGAACTGTTTCTTTTATCTGCTGCTGCTTTTGGCTTACTAAGTTTTCTCACATTTTGTTCAAAAATTTGAGTGTGATTCGTAGGATGAAATATGTTAACTATGTCTTTTCTGTTTCACTTTGTACATTTGGTTATTTTAATTATTTCTTATATCTTCATTTTGCTTTTTTTCACTTTGACCCTGACCTTTAAACTATGGCCTAAAAATTAATTACTTTTAAGGTTCCATATGGGGCCCACTATAGAAGGCATGTTAAAGGTTTTTGTCTCACTTCATGAACAGATTCCTTAATTTTCAGCAAAAGAGGAAAAAGAGCACATCTAGCCTAGGTGGTGTGTGGCGGGCTGAGCATGTACTCCTCTGCAGTACTGAGAAAGCGGTTGCTGTGCATTTCCACACTTATTCCAGGGCCCCTCCCATACCTGGCATTACCTTTGTTCTGCAAACACCTTTATTCCCGGTCACTATACAACGTGTTGTCTTTTAAGCTCTGAAAATAAAATCTGAAGTGCCAGTATTGAACATTCTGGATTCCTGTTGCGTAAAACTCACACCCAGTGCCGAGTCTCGCCCTCAGCAGGGGGGCAATGACCTCTGCAGCCTGAAGCCAGGCTCCAAGACTTGAACTTGGAAGGTTTTATGTAAGGTTTAATCCTCTCGTGACTTCCCTTAAATATAGCTTGGATAATTATTTAGTGTCACAGAAAGGAAGAGTTATTTTATTCTTTTTAGTGTATAAGGTTGTTTCAGATCAGAAGCTGTTCATTGGTAGCTTAGCTGTTTAAACATAGGGATGTTACAGATTTATCTGTCCACCCCAGATCTTCTTAAATGAGAACAACAACTCAGAGCACCAATCAAAACTGTTTTTTAAATAAACCTGATGGTTATTTCATTACAATATAGAGATAATGTACGGCTGTAAATAGCCTCTCTGTGTTGGATCCATGTTATATCTAAGAAGGCTTGTTTCTTAATACCTTCTCATATAGTTTGGGGGGGTTCCCCCACCCTCAACTCACCCACCCAGGAAACCAGACTATGCAACTTGTGTGTGCCATTTGGAGTGTCCTTATGTTTGTCTCAGGAAGCCCGTGGCATTCCCCAAAGCCCTAAGAAAGAGCTCACGTTCATGCAATTTCAGATTTATAAAACAGGTCAAATGATTTCCCTGAAATCACTTACACCTTCTACTTCTTGTGTTTTCTTTTGTGTCCTCACCTTGGCTTACAG
Seq C2 exon
GTATCTCTGGAGACAAAGTAGAGATAGACCCTGTTACGAATCAGAAAGCCAGCACTAAGTTTTGGATTAAGCAGAAACCCATCTCAATCGATTCCGACCTGCTCTGTGCCTGTGACCTTGCTGAAGAGAAAAGCCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119487:ENST00000483937:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.007
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF054227=SIN1=PD(0.1=0.0),PF054227=SIN1=FE(56.8=100)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development