GgaINT0127430 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:597671-598021:-
Coord C1 exon
chr18:597895-598021
Coord A exon
chr18:597790-597894
Coord C2 exon
chr18:597671-597789
Length
105 bp
Sequences
Splice sites
5' ss Seq
CTGGTTAGA
5' ss Score
3.13
3' ss Seq
TAACTATAAATGTTTTCCAGGTG
3' ss Score
8.72
Exon sequences
Seq C1 exon
GCAAACCTGGAGAAGATGTGTCGCACTTTGGAAGACCAACTAAGTGAATTCAAAACGAAAGATGAGCAGAACCAGCGCATGATCAGTGATCTCAGTGCTCAAAGAGCTCGCCTGCAAACAGAATCTG
Seq A exon
GTTAGACACATCAGCTCTAGTTTCGAAATTATATATTCCCCCTACTGGCATAATTTAATTTAAGATTGGCTGCTGAAATGTTTTTTAACTATAAATGTTTTCCAG
Seq C2 exon
GTGAATACGCACGCCAGGCGGACGAAAAAGATGGTTTAATTTCTCAGCTGTCCAGAGGGAAACAGGCCTTCACGCAACAGATTGAAGAACTAAAGCGGCAACTAGAAGAAGAGATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023705:ENSGALT00000001424:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.791 A=NA C2=0.425
Domain overlap (PFAM):
C1:
PF0003816=Filament=FE(14.7=100),PF0157614=Myosin_tail_1=FE(4.9=100),PF0003816=Filament=PU(28.6=65.1)
A:
NA
C2:
PF0003816=Filament=PD(4.6=32.5),PF0157614=Myosin_tail_1=FE(4.5=100),PF0003816=Filament=FE(39.8=100),PF0003816=Filament=PU(12.1=90.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAACCTGGAGAAGATGTGTC
R:
ATCTCTTCTTCTAGTTGCCGCT
Band lengths:
242-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]