MmuINT0103471 @ mm10
Intron Retention
Gene
ENSMUSG00000020908 | Myh3
Description
myosin, heavy polypeptide 3, skeletal muscle, embryonic [Source:MGI Symbol;Acc:MGI:1339709]
Coordinates
chr11:67094955-67096127:+
Coord C1 exon
chr11:67094955-67095081
Coord A exon
chr11:67095082-67096008
Coord C2 exon
chr11:67096009-67096127
Length
927 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
3' ss Seq
CTATTTCCTTCCTGACACAGGTG
3' ss Score
9.05
Exon sequences
Seq C1 exon
GCCAATCTGGAGAAGATCTGCCGAACTCTAGAGGATCAGTTAAGTGAGGCCAGGGGCAAGAATGAGGAGATGCAGAGGAGCCTAAGTGAGCTGACCACACAGAAGTCCCGGCTGCAGACAGAGGCGG
Seq A exon
GTGAGCCAAGCTTGGTTCAGTTCAATCTAGCCTGGATGCTATGTCCAGATGCCAAGCTGGAATGCCAGAAGGTTTTCCCTCCTAAGGGCAGCACCCTTTGCGGGGAGAGAATGTTTTGTTTTGTTTTGCTTTGCTTTGTTTTAAAGACAGGGCCCCACCTTACAACCCTGGTTGGCCTAGAACTCCTTGTGTAAAACAGGCTGGCCTGAAACTCCCTGTGTAGACCAGGATGGCCTGGAACTTAACAGAGATCTGCCTGCCTCTGCGTCCACAACACTGTTTTTAAAGGCCTGCATCACCCACAGCTGGTGAGGGAGGCTTTCTAACAACACACTTTCAGAAAGAAAGTAAATGGAAATAACACACAGACCAGGCTGCCCCAAACCGCCTGGAGGAGAACACTGAGTCTCCTCAGTGAAAACGGGAAGCCAGTGGAGGGTCAGGCTTCCATCTGACAGGACCTGGATGGGACCAGGAGGGGCCCAGCCTTTCTACTGCTTGCCTGCCTTCCCCCTCTGACTTCTGCACACACTCCAGCTGATCATATTCACCCAAGAGTCTAATTTCAAATTTCCAGAGAGGCCAAGTCCTAAGTGTTTTCCTTAATGACACAGCTGCAGTCAGCAGCCACTGGGGAGGAGCTTTGGGAGCAGAGAGGTACCCTGGTGATGTTCACACTCATAATGGTTCTCTCAGCTTTCACCGGCAGAGGTCACTCCTGGCTGCGTAGGGTTTACAGTAGTATTTTACTAGGCTGCTATTTGCTTTTCAGGGATACACCCCTACTCTCAAGAGGAGGGGGGTCTCTCACCTTTATTATTTGCAACCCCATTTGGCCCAATGTCTTACACTTGGTCAGCGAGTGAATGGATGAATGAACGAATGAACGAATGAATGAATGAATGAGCTATTTCCTTCCTGACACAG
Seq C2 exon
GTGAGCTGAGTCGTCAACTAGAAGAAAAGGAAAGCATTGTATCTCAGCTCTCCAGGAGCAAGCAGGCCTTTACCCAACAGATAGAGGAGCTCAAGAGGCAACTGGAGGAAGAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020908:ENSMUST00000108689:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.698 A=NA C2=0.500
Domain overlap (PFAM):
C1:
PF0003816=Filament=FE(15.4=100),PF0157614=Myosin_tail_1=FE(12.8=100),PF104734=CENP-F_leu_zip=FE(30.4=100),PF059116=DUF869=PU(35.5=90.7)
A:
NA
C2:
PF0003816=Filament=PD(0.4=2.5),PF0157614=Myosin_tail_1=FE(11.9=100),PF104734=CENP-F_leu_zip=PD(26.1=90.0),PF059116=DUF869=FE(35.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAATCTGGAGAAGATCTGCC
R:
CTTGTTCTCTTCCTCCAGTTGCC
Band lengths:
246-1173
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types