RnoINT0096484 @ rn6
Intron Retention
Gene
ENSRNOG00000046276 | Myh3
Description
myosin heavy chain 3 [Source:RGD Symbol;Acc:3138]
Coordinates
chr10:53638401-53639508:+
Coord C1 exon
chr10:53638401-53638527
Coord A exon
chr10:53638528-53639389
Coord C2 exon
chr10:53639390-53639508
Length
862 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
3' ss Seq
CTGTTTCCTTCCTGACACAGGTG
3' ss Score
10.18
Exon sequences
Seq C1 exon
GCCAACCTGGAGAAGATATGCCGAACTCTAGAGGATCAGTTAAGCGAGGCCAGGGGCAAGAACGAGGAGACGCAGAGAAGCCTAAGTGAGCTGACCACACAGAAGTCCCGGCTGCAGACAGAAGCGG
Seq A exon
GTGAGCCAAGCCCCGGATGCTATGCCTGGGTGCCAAGCTGGAGCGCCAGAAGGCTTTCCCGCCCAGGGGCAGCAGCACCCTTTGCGGGGAGAGAATGTTTTGTTTTGCTTGCTTTATTTTAAAGGCAGGGTCCCACTCTACAACCCTGGTTGACCTGGAATTCCTTGTGTAAAACAGGCTTGTCTGGATCTGCCTGACTCTGCTTCTACAACCCTGTTTTTAAAGGCCTGCATCACCACACCTGGTGAGGGAGGCTTTCTAAAAACACAATTTCAGGAAAAAGTCAATGGAAGTAACTCACAGAAGAGGCTGTCCCAAACCTCCTGGAGAACACTGAGTGTCCTCAGTGAAAACAGGAAGCGAGCAGACGGTCAAACTTCCATGAGTGATACAAGTTTGCATCTGACATAGCCTGGATGGGACCAGGAGGAGTCTAGCCTTTCTGCTTCCTGCCCGCCTTCCCGTCTGACTTCTGCATACACCTTAGCTGACCCATATTCACCCAAGAGTATACTTTTGAATTTCCAGAGAGACGAAATCCTAAGTGACACAGCTGGAATCACCAACCACTGGGGAGGTGCTTTGGGAGTGGAGAGGTGCCCTGGTGATGTTCAAACTCATAATGGTTCTCTCGGCTTTCGCTGGCAGAGGTCACTCCTGGTTTTGTAGGGTTTACAGCAGTATTTTATTAGGCTGCTATTTCCTTTTCATGGACACACCCCTACTCTCAAGATGGGGTGAGGGGTCTCACCTTTATTACTTGCACCACCACCCCACCCCCAATTTGGCACAGTGGTTACAGTTGGTTTTTGAGTGAGTGAATGAATGAATGAATGAATGAGCTGTTTCCTTCCTGACACAG
Seq C2 exon
GTGAGCTGAGTCGTCAACTGGAAGAAAAGGAAAGCATAGTATCTCAGCTTTCCAGGAGCAAGCAAGCCTTTACCCAACAGATAGAGGAGCTCAAGAGGCAACTGGAGGAAGAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046276:ENSRNOT00000004147:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.698 A=NA C2=0.475
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.9=100),PF104734=CENP-F_leu_zip=FE(29.4=100),PF059116=DUF869=PU(38.0=88.4)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.5=100),PF104734=CENP-F_leu_zip=FE(27.3=100),PF059116=DUF869=FE(39.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAACCTGGAGAAGATATGCC
R:
CTTGTTCTCTTCCTCCAGTTGCC
Band lengths:
246-1108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]