GgaINT0129067 @ galGal4
Intron Retention
Gene
ENSGALG00000007181 | PGS1
Description
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q5ZHN9]
Coordinates
chr18:10102197-10106901:-
Coord C1 exon
chr18:10106368-10106901
Coord A exon
chr18:10102346-10106367
Coord C2 exon
chr18:10102197-10102345
Length
4022 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TTCTCCTGTTCTTCCTGCAGGCC
3' ss Score
12.78
Exon sequences
Seq C1 exon
GAGATAAGGTGAGATACTGTGAGATAGCAAATCAAAGAGTGATGGAAGTAATCGACTCTGCCAGGACACGACAAGAACTCCTTCATGCAAAGACTTTCCACAGCAGCCAGCAAGGCAGCTCCATGTTACCCCAGCATGACTCTGAAGCATCTGAGGGTCTGAAACCAGAACCTGACACGTGGATCTATCCCTTAATCCAAATGAAACCTTTTGGGATTCAAATAGATGAGATGGTCACAGAGACATTGCTGACAGAGGCTGAACGAGATGCCAAGATATACCTCACCACGGGCTACTTCAACCTGACACAAGCTTACATGGACCTCATTCTGGGCACTAGGGCAGAATATCGGATTCTTCTGGCCTCACCAGAGGTGAATGGCTTTTTTGGTGCCAAAGGGGTGGCAGGTGCCATCCCTTCTGCCTATGTTTACATAGAACACCAGTTTTACAATGAGGTCTGCTGCCTTCACCAGCAGGAGAGGGTCCAGCTGCAGGAGTACTCCAGGGCTGGATGGACTTTCCATGCCAAAG
Seq A exon
GTAAGATGTCTGTTTCTCAGGAGGACTTATTCAGAAAGCACGTGTGCTTTGCATATATTTTGATTGTGCAACTGGTGAGGGGATGGTTGGGTGCTGAGTCTGGATTCAACCTTCAAAAGTACTCAGCCAATGTTTAAACATCCTGCTTGTCTAAGCCTGGAAGGTTTGAATCACCCAGGAGACAAGCGTGCAAAGTTACATCTTGCCTCTGGATTTCCAGTTTAAATGTAGTCCTAGGGATTATACAAGAATCATCCTGATGGTGACAGTAAGATATGATAATAATGATAAGATATCGTACTGCCTCAGGATGAAATGGAAGAAGGCATCTAGATGGATATTTATTTATATATTTATATATATATGTTTATATATAAAAAATGATTGCGATAGCAATTGCAATTCCTATATCCCTCTTGATAGTTTGAGCAAAGAGAATTGATGGCTGTACCATGGGCCCAGTGCTGTGAGAACGTTGTGGTCCTGGACTCTGGGTCTTCCTGGAAGCAGAGCTTTGTGGGGTGACCCACACTTCAGAGAATTTGTACCAGGTCCCCTTTATGGCACATGGTGAAGTTCAGAGTACTGATTAGGTGCATCCTGGTGCCTTCTGGGAGTTGGAGGGGAAGTTGTTGAGAAATGGATGTTGCTTAACAAATGTAGATGATTAAAACAAAAAATAAATAAGTACTGGCATAATAGCTTTCTGCAGAAGGCCCCAGGTTCTTTCTTGACAGAATATTCAGGCCATTCACAAGCCCAACACCACCTTGACTTGCAATTTTCCTTCCAGAAAATCTGGATGCTGACTCTCCTCCTACATTATACACAGTAGAATGTAGTTATGCAAGTAGTTGAGGACACCTGGCTGCTTACAGCAGGAGACGTACGGTGTGCAGCTCACTGTGAGCAGTGCTCAGTCACACTGAGGCAGTTCTGCTGTGCATGGCAGCACCTTCTGCTGCTCTGCTCTGGGAGCAGCACACTGCTGTCACTGTGTCACTTCCTGCAGTGGCTCACCAGTCCCCTAGGGCAGTGTGGTTCCTGTAAGCAGTGCCCTATCTGACAGCCAGTTTCCTCAGGCTGTGCAGGGGGGCATTGTCACTGCAGCACGTGTCTGGTGAGAAGGGTGGACGGATGCGCCCTGAGCCAGCACTGGCCTGTTCCAGGGCCCTGACCAGTAGTTCAGCTTGATTTGTTTGTTTGAGATTAGCTGTTAACGACTGTGGGAATGCCTCTATCTAACTGGCTTCCTGCAGGGCTGTTCGGAAGAGGGTTCAGAGGTGGCAGGGAGAGAAAGCTGCTGAGTGGGCCTTCTCTTGTCTGAAGAAAATACACACATGTTACTGAGTTGCCTATATATAGAAGCCGCGAGCCTTCCTGACGCATGCTGTGCCCTGGTGGCAGTGACATCAGCCTCTGCAGCTGCAAAGCCCTACCTCGGTGCCTCGTGGTGCCTGCCTGGCTGGAAGCGTTGCGTGTGCCGCCTTCCAGGAAGCACCTGCTTGAGAGCTCTGTGCTTTGTAGGTTGATCCTCTTGCTGGGCACTGCTGGCTTACAGTGGGGTTTCCCTTGTTGGCCCTCACTGAGCGTGGCAGCTCTCCCAGGATCCCAGAGGGCGCCCGCCCATCACTCTCTGTGCTGCAGCAGGAGGCTGTGGGCTGCCCGGTGCTCTAGGAGCTGTCTGCTCTGCAGGAGTCTCACAGTGTGAGAGAGGGCAGGGCAGAAGGAGAAATGGAGGAAACCTTGGGGCAAGTGAAGGGTAACTGCACCTGGAGCCTGGCTCCTGGACTGGGGCACGACACTAGGCAGTGCCTGTTACCACTTTGTTCTCATGCTAAGATGAGCCTGCCTGCAGCAGTGTAGACCAGCAGGTTTCTGGGTGGGGTGCTGTGGGTGGCGCAGGGCTATCTTTTGGGATTAGGGTCCCTTCCATGCAAGTGTCAGGTGACAGAGTGCCAGGCAGGTGGCTGTTTGCTCTGAGATAAGCCTGTGTTGCTGCTATTGAGTGGTGGCCGGGAAAATGCTCTTCCTCTTTCTGGAAAGGTGAGTCACTGTTTGAGCAGATCCTGCCAGGTGGCCATAAAGCTGGAGACACAGTAAAGGGCTGCTGCGTGGCTGCTTAGAAAGAGGAAGGTGGTGGTTGCTGCCTGGCATGGCTCTGTATGCAGAGATCCTCCTAGCTTGGGCACCAGCAGGCCACGCAGCTGCCATGATAGCTGGCACAGCCTGCAGGAGATGCACTGCTGCTTGAGTACCTCCTGGGCTCCTTGCCTTCCACTGCACCCCTCTGCAGCTCTGTGGGGCAGTCCATGGGGCAGCCACAGCACAGGCAATGCCAGCTCAGGGCCTGGAGGTACAGCTGAAAGCAGCAGTGAAGCTGCTGAGCGTGTGATGTGGGGGCGGGGAGGAGGTTACAGGAACCAGCGGTGAATCGGCAGCTTCTTACTCAAGGCATTCTTGGAACTGCTCTAGGGTTGAGTTAGGAAACCTGCTTCTATTTTAAGGCCTAGGTGGTTTTTATGGTATGGTTTCTTTGTTGTAGTCTCCATGTGACTGGCGGTGGGGATCAGCCACCAGTCAGACGCTGCTGGGGCTGTGCCCCCCAGGGAGGGCAGAGCTGGGTGGTGGGCGGCCCTGTGAGCCTTCATCCTGGCAAGAACTGAACTCATCTTCTGGTGAAGATCACTCCTCAGGAAGCGAGTGGGCGTAGTAATTAGCACTTCTCTCACCAGTGCTTATTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGTTGCTGCCTGGCATGGCTCTGAATGCAGAGATCCTCCTAGCTTGGGCACCAGCAGGCCACGCAGCTGCCATGATAGCTGGCACAGCCTGCAGGAGATGCACTGCTGCTTGAGTACCTCCTGGGCTCCTTGCCTTCCACTGCACCCCTCTGCAGCTCTGTGGGGCAGTCCATGGGGCAGCCACAGCACAGGCAATGCCAGCTCAGGGCCTGGAGGTACAGCTGAAAGCAGCAGTGAAGCTGCTGAGCGTGTGATGTGGGGGCGGGGAGGAGGTTACAGGAACCAGCGGTGAATCGGCAGCTTCTTACTCAAGGCATTCTTGGAACTGCTCTAGGGTTGAGTTAGGAAACCTGCTTCTATTTTAAGGCCTAGGTGGTTTTTATGGTATGGTTTCTTTGTTGTAGTCTCCATGTGACTGGCGGTGGGGATCAGCCACCAGTCAGACGCTGCTGGGGCTGTGCCCCCCAGGGAGGGCAGAGCTGGGTGGTGGGCGGCCCTGTGAGCCTTCATCCTGGCAAGAACTGAACTCATCTTCTGGTGAAGATCACTCCTCAGGAAGCGAGTGGGCGTAGTAATTAGCACTTCTCTCACCAGTGCTTATTTCATGTGAATTCACCTGTCAGAGCAGGGAGATGCCTCTTCATGCCGCTGTCTTGTGAGGTCCCAGGAAGGCAGTTGCTCGTTGTGCTCTGCTCCTGCTTCTAGAACAGACTGCTCCAATGCTCATGTGTCTGTGTGGCACCTCATCCCTTGGTGAAGGTTTTCTTCTTTTTGCTGCAGTGTACTGACACAGAGTACTGTTTGCCTTATGTCAGTGCATCTGAGATGTTGTGTTGCAAAATGACCTCTAACTTAATGGTGATTACTCACTCTGAATTATTTTTGGGGCCCTCTGTGCAGTATATTTACATTCTTAAGGGCATGTCACGGCAGCCCCTGTGAAAAACATGCAAGTATGGACAGTGCAGAGTGTGCAAGTGTACCCCAAGGATCACACAACCATCCATCTTCAGGGAAGTCTGTTTTTGAGGGCTTGCTTTGTGTTGTGATCACTTATAGTTGCTGTAAATCTGACATGTTTAATTCATTTCTTCCAAGTGAAGCAATTGTTTGAGGCTACCCCAGTCATTTCCTTTGTCTGCCACACTTCCTTTCTTCTCCTGTTCTTCCTGCAG
Seq C2 exon
GCCTCTGGCTGTACCTGGCAGGGAGCAGTCTTCCCTGCCTAACCCTGATTGGGTCTCCTAATTTTGGATATCGATCCGTTCACCGTGACTTGGAAGCTCAGGTTGCAATAGTGACAGAAAATAAAGCTTTGCAGCAGCAACTCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007181:ENSGALT00000011630:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.084 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=PU(63.9=55.3)
A:
NA
C2:
PF130911=PLDc_2=FE(31.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]