MmuINT0118512 @ mm10
Intron Retention
Gene
ENSMUSG00000017715 | Pgs1
Description
phosphatidylglycerophosphate synthase 1 [Source:MGI Symbol;Acc:MGI:1921701]
Coordinates
chr11:118005370-118014722:+
Coord C1 exon
chr11:118005370-118005891
Coord A exon
chr11:118005892-118014573
Coord C2 exon
chr11:118014574-118014722
Length
8682 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
TGCACTTCCTTTTCCCGCAGGCC
3' ss Score
12.57
Exon sequences
Seq C1 exon
GTGACCGGGCTGCGTACTGCAGAGCAGCGAACAAGCGGGTCATGGACGTCATCCACTCGGCCAGGGCCCGGCAGCAGATGCTGCACGCACAGACCTTTCACAGTGATTCTCTGCTGAGCCAGGAAGAGGCTGCAGCTGCCGGGGACCGGAGGCCAGCGCCCGACACCTGGATTTACCCACTGATCCAGATGAAGCCCTTTGAGATTCAGATTGATGAGATAGTCACGGAGACGCTGCTGACGGAGGCTGAGCGCGGAGCTAAGGTCTTCCTCACCACTGGCTACTTCAACCTGACCCAGGCCTACATGGACCTGGTGCTAGGCACTCGAGCTGAGTATCAGATCCTTCTAGCCTCACCGGAGGTGAATGGCTTCTTTGGGGCTAAGGGCGTGGCGGGCGCCATCCCAGCCGCCTATGTGCACATTGAGCGACAGTTCTACAGTGAGGTGTGTAGCCTGGGGCAGCAGGATCGGGTCCAGCTCCAGGAATACTGGCGCAGGGGTTGGACCTTTCATGCCAAAG
Seq A exon
GTATGTGGTGACTGGTCAGAGGGCCCCATGCCCTGGGGATGCTCTCCGTGCTTGGTTCGCAGTGGTCTGGGGGGTTTCATCTACATGTGGAGCCTTAGAGCAGCCCTCGCAGGGCTTGCTGCTTGTCCTAGGTCCTGTCTAGGGGTTTTAGTTGTGCAGAATACTTCCCCTTTGTGTGAACAAAACTTTAAAAATGGATTTTTGTTCCCTCTGGTTCTGGGGACCAAGCTGAGGACGTCTACTTTGCCATTGCTGTAAATTAAATGAAACCCTCAGTCCTTTGGTAGCTGTTGAGGAGCATGTTCCTGTGATAGCTGCTGAGAGGACCCCGAGGAGCTGTGGAAGGCTGGCTTCTGCGGCCAGGCTCACACCTGCCTGTTGTGCAGACTGCTGATTTGTCGAGAATACCCAGGGCTTCTGCCCTTACCTCATATCGATGGATTCCCTTTCTGTTTGCCAGTTTCTGCCTTTTTTCCCCAGAGAGGATGGAAGCGGCATGCTCAGTGTATAGCCCTTACCTTCCACAGTGGAAGGAAGTCACACAAACTTTCATTTTTTCCTCTGTGGTTCTGCGTTGGGCCCAGGGCTTTGCACATGCTAGGCAGGTGCCTCCACTGAGCTGTGCTGTGTATTCAGCCAGTGCCCTGGACCGTCCACATGCAGCCCTGTGGTAGACATGGTAGCGTCTACGTTGGGTATGTAGTTTTTAAGAAGAGCAGCCAGGGGAGGCAGGCTCTCAGGTGTACCTCTCTGACATATGGATGAAACATGGTGAAAACCTTGTGCCTGGCACCAGTTTGCCCCGTGCACCCTTGCTGAGCGTGCCCACTTCAGGGTGACTGATGAAGAGTCACCTTACCCCAGTACTGGTTCTCTATCTGCGGAGGTATGGACAGTGTCTGGGAGTCCTGGGTTCTTATTTCTGGCTTCTCCAGGTAGTGTCTGGCCCTCTGACTCCTCAAATGGGACTTTTTTCACTCTCTGAAACCAGCATTTTCAGTAGGGGATACTTTGTTATTGTTGTTGCTTGAGACAGGGTCACTGTGTCCCCCTGACTGGTCTGCAGCTCTGTGTGTAGACCAGGCTATCCTGGAAATCATAGAGCTCACCTGACTTCTCTTCCCGAGTCCTGGGGTTAAAGACATGGTAGCATGCTTGGCTAGTGGGAGGTATATTTTAAGAAATACTGAAGTACCTTGCTGTTCTAGAGCTGGCTCCAATTTCTGTGTGGAATTTAACGTATTTTTATTTGACTTATTTTTAAAAAATATTTGTGTGTTGGTGGAGCGTGCATGTGCCATGGCCTGCTTATAAAGATTATAGGCCGCTGTGGGGTTGAGTCTCCTCCTACCAAGTGAAGGCCGTCAAGCAAAATGCTTTGTTTTGTTTTGTTTTGTTTTGTTTGAATCTGTGGTGCTGGGATGCGTTCCAGTGCAGAGTGTTCCAGTGTACGTGTGTCAGGTTCCCCCCCCCCCCCCCCCCCCCAGCTCCATCAGCCCCAAACAGGACAGAACACCTCAAAGACATTGGCTCCTCACCTTAAGACCCATGCTTTCCGATGAATGGTGGAGTGACTTGCCTGTCCAGTCGCCCTCCCTCCTTGTGCTGGAAGCCCTCATTCTTGCCCAGGCAGATAGCGTCGTTTGTGTGGGAATGACTGTCCCATTGTTGGTCTCATCCTAACTTGTGGGCTGAATGAAGCTTGTGGTCAGGGCAGGTAGAGCTGGCCAGAGGGTGTGTGTGGAAAGACTTTCAGGTTGGCCCAGTTCCTTCTGGGAATGACAAGAGCCCCAGGGTGGGGCATGGAGGGAAGAGCCAAGCAGCTGAGTGAGGCCAGAGTGTTGGGGAGGTGTAGTTCACAGGTCCCTGTATAGCTATAGGCAGGCCAGACGCTTGCTGCTCCAGGTACATGATGTGACCTCAGGCCTGAGCCCCAGCATTGCAGCTGGAGAGGCTCTGGTCTCAGGTCTGGCCTCTGCTTCAGGTGTTCCCCTGACACTGCACTGATAAATGTGCACGCTTGTGTGTGTGTGTGTGTGTGTGGTGATTCCCCAGTTACACCCACCTGGCTTTTCCTGTGTGTCTGGCCCGCCCTTTCCCGGACTGTGTGCTCTTACCCCAGCTCACCCCTCCCCCCACTCCTGCCCTAGTGTGGGTGGGGCCTGCCATCTGTGAGTGTTGGATTAGTAGGGAGGCTGCGCATGGAGGGTCTCATATCTGGACCTTAGAATTTGTGTGTAAGAAGTGGGAGAGGAAGAGAGGGCAGAGCTGAGTGGGGGTAGACGTCGCTGAGATTTGGTTCTGACATAAGGTCTTTTATGTGACCTGAGCTAATTGCTGTGTCACTGAGGATGGCCTTGACCTTCTAATTCTCCTTGGTGTTGGGATTACAGCTGCTCTGAAGCACTTTGTTCTGAGTAAGAGTCCTTGCCCTAGAGCCAGGAATCAGAGGGCAGAGGTTACTGTCAGGGTGAAAGGCCAGTACCTTTCCTGCTTAGTGGCTGCTGTCTTCGGTGGGTCAGAGTCTTTTTTGGGACACCCGCTGATAGTTTTAGGAGCCTGTATGAGTATGGGATGAGCAGGCAGTGCACAGGGTGCCTGTGCGTTCTGATGGTTGGGGTAGTCAGTCATTTCCTGCAGGGCCTGTGCTGGGTACAGGACTGGGGCCTGGTTGGTTGTGTCTATTTTGGGTCCCTGGAAAATGCATGATTACCATGCAGCTGATACCAGGGTTCTTTTGCCCAGGCCTCTACAGGACAGGCTTGGGCTGGTCTCAGCTCTTCCTGCTGCAAAAAGCCCCTGGTGAAGGACAGCAGTCACACAGGGTTCCCTTGCAGCTTTCTTGCAGAGGTTTAGGAGGCCAGGGTTTGTTTGCTCTGAGGTATTTGCTGGGAAGCTGGGTGTAGCTTTGTGACCCTCTCAGTGTGGGCAGAGGTAAGGATCAGGGACAGCCTGAGTGGATGGTGAGACCCTGGGTTGCTTGTTGCTGCCGTGTTAGGGAAGCTCATCACATGGCAGTTGGTGGCTGAAGCAGCCTGCTGTGGAACTCATGTCATCTACAGGCCGATGTCTTAGCACGCTTTACTTGCAGAGAACCACAGGGAGCACGCAGTGTGTACAGTGCATGCTTTGGGCACTTCTGCAATGTGGCTTGTCTGCTGAGTTCTCATTTGGAATTTTTAGAAGTGGCTCCTAGAGCTTAGTTCACAGAACTTCGACAGTAGCTCCGGTAGAATGGGGTGATGATGTAGTGCTGCCTGGTGAGAGCGGCAGCCCACAACCAGGGAGCGCTCCCTGGGAGGAGGCTCTGAGAGAGAGTGGATGACTGACTGGGTTCACCAGGGTCCCCCCACTCCCTGGTCTTGGTGGAGTGTTAGGCATGAGTAGTGTGGCCCTTGCTGGGTGGGTGGTCTCTGTAGATTGCTGAGCATTCCTCTTACCGTCTCAGTGCTGTGAGCTGCCGCCGTCACCAGCATGGAGGAGTCCATGCTCACAAGTGGAAACTGAGAGGCTTGGGGTAGAGCTTGGTGCCGGGCATTTGCCTACATTCAGATGTGTAGGCTCCGTCCTCAGCTCTGCAGAGCCTCCCACCCTCCCCAGCTACTCAGTGTATCCTGCTTTCCCACCACCAGGAAGGCCAAGCACTGGTGAACTCCTAGGTGGGTCGTTTTAAGCTGTGTGTCTGTAGCTTGGTTGCTGTGTCTGGCTGTGAAGGAGAGTCCTCGGGAGCAGGCAGCAGCGGGAGCAGGCAGGGGGGCACAGCTGGGTCACTGCAGCTGTGCTGCTCACTGATGGCTTGCTAGTCTCTGGCCTGGCTGTAGGGAGAGTAGGACAGGAACAGTCTAGGGGCTGGGGTAGTCTGCTGACTGCATCTCAGACGGTCAGCCTCTTTGAGTAGGTGCTGTGGGTTCACTAGGGTCCCATCTGGTCCTGGTGGAGTGCGAAGCCTGCGTGTTAAGGCACGGTGTTAGCCCAGAGGAGTCTGTTAAGCTCCAGCATGCTTAACTTGGTGCCTGAGGGGCAGCTTTAGCAGAACCTAAGAGTGTGAAGTCAGCTGTGTCTCAGCCCTGCCCAGTGGGGAAGCCAGCGGCTTTAATCAGGCCATCATCACTTTGACTTCTTGCCCTGAGCAAGACTTGTCCCTGCTGTGTCCTGGGAGCCTGCAGCCCTGTTAGGCAGGGACCACACCCATGCTCACTGTACAGTAAGCTGCTTTGTCCATCTGCCAGGCCACAGGCTCAGTGCAACCCCCCCCACCCCCCCACCCCCGTTTTGGGGGATCACAAAGGACTGAGCATATTGACTTGGTTTCTTCTGGATGAAGAGTTCTGGATTAACAAAGCCCTCTGTGTGGTCAGGGATCTTTGGATTAGAGACTTCTGGCTGTACAGAGAGAATCTGTTAATGACTGACAGGATGCCATTATTTTTATTGTCTTCCCGACAGGCTGGTTGGCATCTTGCCCAAAGGTGAGCTGGTGAGGCAGCTTGGCAGACCCACCCTGTTCACCTGGGCTCCATGTGGGGTGGTTGTCACCATGCATATGACCACCTCAGGTGACAGACTCCAGCCCCAAGGCCTCAGGAGTTTCTTAGTCCCTCTGACACCAGAATCAAGGACTGGTGCTCATCTGTGGGAGAGCAGAGCAGAGCTGTGATGTCTTCGCTCTCCTGATTTCACAGGGATCTGAGACTCTGGAGCTCACAACAGTGTGGGGCTATGGGAGGCCATAGAAGTTCATCTGTCTGGAGAAGTCCTCAGAGAAGACTCTGGCCTACATGTGCAGAACTCCTGATTTTCTTGTTTAGGTTTATTTATTTTATCTTACATGTGTGGGGTTCTGCCTGCATGTGTCTGTGTGTGCCTGGTGCTTCCAGAGATCAGAAGAGCACACTGCATCTCCTGGAACTGGAGTTAAGAGTTGCGTAGATGCTGGGATCCAAGCCTAGGTCCTCTGGAAGAGCAGCTGCACTCTTGACCACTGAGCGTCTCTCCAGCCTAGATGTCTGTCTTATTTTTAAGCATTTAATCTACTTGTTTGGGAAGCTACACCTCTGTGATTTTGTTCAGATATTAACATGGCACCTATGTGCCTTGCATGGATCATGGAAGGCACTGGGGGTTGTGTCTCCTGCTCTTTTGGGACTTCTGTCTCAGAAGCACGTCACTATCAGAGGGACCTGTTTAGATCATGGCAGGCAAAAGCCCTGAGCAGAAGGGATCCAAACTAGAAAGGAGTCCGGGTCAGGAAGGGTCTCTCTGTGCAAAGAGCAGAGGGAGTGGGACACAGCATCCTGCCCAGTACAGATAGGACAATGCAGCCCCAGCCCTGGCCTCCTCGTGCATTGGGAGTGCAGTCTATGCCCGGGCAGAGCAAAGGGTGGCCAGGGCCTGTTTGAAAGTACTGGAGACTTCTGTTGTGTAAAGGTGCCTAGAAAAGGACTTCATTTGCTGTTTTGACACTGGGTCTCATTCTATAGCCCAGACCAGCCTTGAATTCATAAGAATCCTTCCTTCCCCAGCCTTTTGAGTACTAGGATTACATGTGTGAGCCACCACTCCCAGGAAGGTGACTTTTTTTTTTAAAGAGACCAGAGTCAGTAGACAGCAGGGGACCTTGGCCTCTGAGTACAGACCACCACCTAGTGTTGCAGCCATGGCAGTAGCTGCAGTGACTTCCCCACTCTCCCTGGTGCTCATGGCTACTGAGTTTCCCTTGGCTGCGAACCACCCTCCATCCACTCCCCAAAGTGCTTTTGCCTTCCCTAAGCCATTAATTCCTGGAATTGAGGATATGTTGGGCACAAAGGTCAGGCTTTGGGGTGAGGAATTAGAGCTTGATGATTGGTTTACAACCCCTGTGTTGGAAATGTGTTTCCTCCTCTGTCCTTAGAGCCTCCTGTGTACAGGATGGGGAGTGTGTAGGGGGAGCTGCTGGGCACAGCTGGGCCCAACCAAGGAAGGGAGATGAATCCTCAGTATACCAGCCAATGCTTCAAGCACCTGACTTGGAACCTAGATGGGGAGGCTCCTAGTGTGCTGGCCTCACAGGCCTCCCTGGGGCTCAGCACCAGTGACCATGGTCCATAACATGGGCAGTGTATCTGTCTGGGCAGTATCATGGCCTATAACATGGGCAGTGCTCCATCTGTCTCTCTTTGGGTTCTCCCAAAGGTGTGCTAGTCTGTGTGTGTACGAGCGTGTGTGGGGGTGGGGAGACAGACAGAGCTCGAACGAGCACATTGTCTTGTATAGCCTAGGCTGGCCTTGAGCTCTTGATGTAGTTGAGGGAATCTGACCTTGAACATCTGTTCCTATTAGGTCTAGCTAGCCCCAGCTGACCTGGAACTTGAATCTTTAGCTCAAAATGGTCTCAAACATGAAATACTGCTTCTTGAGTGCTGGGGTTACAGGTATAAGCCAACATGACCAGCTGCTCATTGACTTTTTTGAGTATCTTAGCACGCTTTACTTGCAGAGAACCACAGGGAGCACGCAGTGCTACTAAACTTGATTTGTAGGCATTGGTAAGGTGGCTCAGAAGCCAGAGATGCTTGCTGTGCAAGCCTGACAGCTTGAGCGCTGTCCCCAGAACCATGTGAAGGTGGGAGGGGAGGACCAGCTTTGTCCAGCCGTTCTCTGAGCTCCATGTGTGCTCTCTGGCATGTGCATCCCAGAGTCAGGATGACTCTGACACTCTGATCTTGGGCCTCCACCTCTGAGTGCTGGGCTATGTGCTGAGATCCATCCCAGGGCTCTGTGTGCATGCTAGGCCAGCATTCTGTCAACTAACTGAGCCACACCCCAGACTTCCAGGGACAAGACTGTAGGGCACTGGGCAGGGCATCCTCAGGAGGCCTCAGGCCGCAAGGGTCTCTGGGCTCTGAGTCACTGTCATTGTGTCATGCTAGCTACAGGTTTGTAGTGAATGCCAAGCTGTTTGTAGCTGCAGTGGATTTCTCTGGTACTCAGTGCTTTGGAATTTCTCTGGGCTAGAACTAGCCCCACCCTGGTCTACTCCCACAATCACCTTTTTCTCCCCAGACTTGTCTTTTTCTTGCTGGCTCCTGGAATGGTAGACACATTAGGGGCCAGGGTGAGGCTCTGGGGTGAGGGGCTGGAGCTTGACAGTAGTTACACACATGTCTCTAAAGAGGCCGTGTGGAGGTCAGCCTAGGCTTGTGAGGAGGCAGCGTTACAACCTTACCCCCAGGGTCATAGAGTCTCAGGGTTTGGTGTTAGAGGAAAATCTTGCTTTTCATATGTGGGAAGCAGCCTGACCCATGGAGGGTGTCCCCCTCCTTTCTTTGAGCAAGATCAGAAGGTGGTTGGCAAGTTGTACCAAGCAGACCCAGTCTGGGTGCAGTGGGAAGGAAGGATTCCTGTCCCGAGGATTCTTTGCCCTGGTTCCATGCTATGGGAAATCTGAGGTGGGGACAGGGAAACTTAAACACATGAAAAACTTGAGGTGTGCAAGAGTAGACATGGCCTGGATCCCTGGATAGGGAGAGCTGCCTGGAGCAGAGCTGCTGGCCAGGGGGTGGGAGGGACACCATCCTCTGGCCTCTTGTCTTATTGCTGAAGCCGGCAGGTGGCTTTGCTGAGGCCTTCAAGGGCAGGACACCAGCCACAGAAGTGAGCAGCAGCCCTGTCAGCTGTTGCCCAAGCAGTTCTTGAAACTCTGCTCTGCATGGACATTAGGAAGCAGTTTTCTGCTGTAGCAGCATGTGTGTTACATACAGGCCATGTGTCTGTGATGTCTCAGCATGTGTGTGGGCTCTCTGTGGATTTCGTTGATGGAGGATCTGTGATGGGAGGGCCACAGGGAGCTGGCCTGGTGCAGACCAGGGGAGCTGGCTGGCTTTCTTGGATAAACTTCCTCAGGCTAGTAAGGGGAAGAAGGGTAGAGGCTGCTAGGCTAGCCTGGGGAGGACAGATGCTCAGGACTAGCTCTGTGGGGCTTGGCTCTGAAGCCTTGGAGCTTGAGATCATAGAAGAGAGTGCAGAATGGGACCTGCCATAGGCATCTAGTAGTACTTAAGATCCTGCTAGAACAGCAGTGTCCCCATGTGTACTGTGACAGAGCAGCTTCTGTGGGACCCACTGGCAGCACACTTCTTTATGTGGTGCAGGTGGTAACTAGAGACACGAGCAAACTCCTAGGTGTCCTGAGGTAGAAAAGGTGGGCAGCTGTATGTAGGCAGGCCTGGTCCTACCAAATGCCTCAAACACCATGTGACAGCCACCTCTGCTGTTAGGTAGGGTAGAGCCTACTTGCCTGTTTGTTCTGGGCTCCCAGAAGGGATGGAGGCTCTGGTGAGCTCCGTCTTGAGCTGCACTTTGCCAACAGGTGCTTCAGGCAGTTGAAAGAGCTGGGGCTAGTGGTCTCTGGAGAGCAGTTAGGGGGAGGGGAAGACCCCAAGGACATCATTGACAAAGTTCATTCAGAGAAGCCAGCTCTCCCTGCTAGGGGCGTGAGCCACAGCCGAAGTAGCAGAGAGACAAATGGCCCTGCACTCAGTGGTGTGGAGCACCATGGCAGTAGCAGGCAGGAGGGAGCCTGGTTCAGTGCGCCCTGATGCTGCCCTGTGGCTGCTTCCCTCCTAGGTTGAGAGGACGGTGTGTGGCAGAGACCTGGCAGGTGTTGAGCTCACTTCCTGTCTGCACTTCCTTTTCCCGCAG
Seq C2 exon
GCCTCTGGCTGTACCTGGCAGGGAGCAGCCTGCCCTGCCTCACGCTGATTGGCTCTCCTAATTTTGGGTACAGGTCAGTTCACCGGGACCTGGAAGCCCAGATTGCCATCGTGACGGAGAGCCGGTCCCTGCAGCAGCAGCTTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017715:ENSMUST00000132676:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=PU(67.1=65.1)
A:
NA
C2:
PF130911=PLDc_2=FE(28.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types