RnoINT0110191 @ rn6
Intron Retention
Gene
ENSRNOG00000002949 | Pgs1
Description
phosphatidylglycerophosphate synthase 1 [Source:RGD Symbol;Acc:1305052]
Coordinates
chr10:107012746-107021905:+
Coord C1 exon
chr10:107012746-107013267
Coord A exon
chr10:107013268-107021756
Coord C2 exon
chr10:107021757-107021905
Length
8489 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
CACATTTCCTTTTCCTGCAGGCC
3' ss Score
11.14
Exon sequences
Seq C1 exon
GTGACCGGGCTGCGTACTGCAGAGCAGCTAACAAACGGGTCATGGACGTTATTCACTCAGCCAGGACCCGACAGCAGATGCTGCATGCACAGACCTTTCACAGTGACTCCCTGCTGAGCCAGGAAGAGGCTGCAGCTGCTGGTGATCGCAGACCAGCACCGGACACCTGGATTTACCCACTGATCCAGATGAAGCCCTTTGAGATTCAGATAGATGAGATAGTCACTGAGACCCTGCTGACGGAAGCTGAGCGGGGAGCTAAGGTCTTCCTCACCACTGGCTACTTCAACCTGACACAGGCCTACATGGACCTGGTGCTAGGCACTCGAGCCGAGTATCAGATCCTTCTAGCCTCACCAGAGGTGAACGGCTTCTTTGGGGCTAAGGGTGTGGCCGGCGCCATCCCAGCTGCCTATGTGCACATTGAGCGACAGTTCTACAGTGAAGTGTGCAGCCTGGGGCAACAGGATCGGGTCCAGCTCCAGGAATACTGGCGCAGGGGCTGGACCTTTCATGCCAAAG
Seq A exon
GTATGTGGTGGCTGCCCGAGGGCCCCCATCCCATGGGGATGCTTTACATGGCTGGTTCACAGGTCTGTGATGTTTGTGTCTACCAGTGGGAGAGAGCCCTGCCGAGTTATCCTTACAGCAGCCCTTGTAGGGCTTGCTGTTTGTCCCAGGTCCTGTTTAGGGGTTTCAGTTGTGCAGAATACTTCCCTTTATGTGAACAAAGCTTTAAAAATAGAAACCATTTGGTAGATTTTTCGCTCCCTCTGGTTCTGGGGACCAAACTCATTAATTTTACCATTGATGTAAATTAAATCTTCAGTTCTTGGTAGCTGTGAGGGAACATGTTCATGTAATATCTGCTAAAGGAACCACAAGGAACTGGAAGGCTGGCTTCTGCCTCCGGCTCACACTGTCTGTTGTGCAGAGGACTTAGTGCGGATGCTGATTTGTGGAGAGCAGCCCCGTGCGCCTGTCCTTACCTCATGCTGATGTGCTCTGTCCTGCTTGCCAGCCTCTGCCTTTTCTCCCCAGCTGCATGCTCAGTGTATAGCCCCTAACGTACGCAGGGGAAGGAAGTCGTGCAGACTTTAATTTTTTCTTTCTGGTTCTGAGTTGGGCCCAGGGCCTTGCACATGCTAGGCAGGTGTCCTCCACTGAGTTGTGTTGTGCATCCAGCCAAAGTCCTGGGTAGAGATGGTAGAGTCTACCTTGGGTGTGTGTTTTTCAAGACTGGCCCAGGTGAGGCAGGCTTGCGGGTGTGCATCTCTGAGGTGTGGGCGAAACGTGTTTGAGAACCTTGAGTCTGGCACCACTTTGCCCTGTGCACCCTTGCTGAGCGTGCCCACTTCAGGGTGACTGAAGAACCCATCGTACCCCAGTATGGGTCCTATATCTGCAGAGGTGTGGACAGTATCTGGGGAGCCCTGGGTTCTTCTTTCTGGATTCCTGACCTCCGAGCACATATCTGATTGGGCTCTTGAGATTTGTGGACATGTCTGACTCCTCAAGTGGGACTTTTTTCCACTCTCTGAAGCCAGTGTTTTCAGTGGGGGGTACTTTTGTTATTGTTGTTGCTTGAGACAGGATCAGAATGTAACCCTGGCTGGTCTGCAGCTCTCCGTGTAGGCCAAGCTGTCCTGGAAATCACTGAGCTCACTTGCCTTCTCCTTCCTGAGTACTGGAGTTAAAGGCATTGCTTTCCATGCTCGGCTAGTGGAGACATATTTTAAGGAACAGTGAAGGACTTTGCAGTTCTAGAGCTGAGTCTAGTTCTCTGTGCAGTCCTAGAGCGGAATCTAGTGCTCCATGCAGTTCTAGAGCGGAATCTAGTTCTCCATGTGGAATTTGACCTGGTATTTTTATTTTACTTATTTTTTAAAAATATTCATTAGTATGTGTTGATGGAGCGTGCACATGCCATGGCGTGCTTGTAAAGATTAGCAGGCAGCTGTGGAAACGAGTTCTTTCCTGCCACTAAGTGAATTCCATCAACCAAACTGAGTTCTGCGGGCTTGGTGTCGAGCACCTTCCTACGGACTGGCTCACTGTGCTTTGTTTGTTTGCATCTGTGATCTGTGGTACTGGGTGTGTTCCAGCATGCCTTGCATGTGTGTCAGGTCTCTCTCTCTCTCCCTCTCTTCCTCCACACAACAATAACAACACAATACACACACAACAACAACCACCTCTCCTCTCTCTCCTCTCCCCCTCTGAGCTCCATCCTCCAAACAGGACAGAACATCTCAGAGATGTTGGCTTCTCACCTTAAGACCATGCTTTCTGTTGGGATGCTTGTCCATAGGTCCTGCCTGTGCTAGAGTCCTCATTCTTGCGGGGCAGACAGTCTTGCTGGTGTGGGAAATGACAAATGACTGCCCCATTGTCAGTCTCATCTCAGCGTGTGGGCTGAGTGAAGCTTGTGGTCAGGGCAGGTAGAGCTGGCCATAGGGTGTGTGTGGAAAGTCTTTTCAGGTTGGCCCAGTTTCTTCTGGGAATGACAACAGAACTCCAGGGCGGGGCAGGGAGGGAAGAGCTGAGCAGCTTTGTGAAGCCAGAGCTTTGGGGAGGCTTTGTAATTCACAGGTCCTTGCTTAGCTATAGGGAGGCCAGACTTCGTGTTCCTCTAGGTACACGCTGTGGCCTCAGGCTCTACCAGCATTGCAGCTGGAGAGGCTCTGGTCTCATGTCTGGCCTCTGCTTTGGGTGTTTGTCTGAAGCTGCACTGATAAATTTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGATTCCCCAGTTACACCCAACTGGCTTTTCCAGTGTGTCTGCCCTGCCTTTTCCCGGACTCTCTGCTCTTGCCCCTATTCCTCCCTCCCTCAGCCTGTCCTAGTGTGGGTGTAGCCCTGCCATGTGTGAGTGTTGGATTAATGGGGAAGCATGGAGAGTCTCACATCTGGATCCTAGAATTTGTGTAAGAAATGGGGAGAGGCAGAGATGGTAGGGCTGAGGTGGGGCAGATGTTGAGACTCTGGCTCTGAAGTAGGGTCTTTATGGATCTGAGCTTGTAACTGCAGATGGCCTTGACCCTCTGATTCTCCGTGTTGGGGTTACAGCTCCTTTAAAGCAGCTTCTTCTGGGTAGAGTCCTTGCCCTTTCTCTTTCCTGCTCAGTGGCTGCCATCTAGGGTGGGTTACAGCCTTCTCATACAGGGCCTGTGTGAGTATGGGATGAGCAGGCAGTACACGGGGTGCTTGTGGGTTCTCTTTCCTGCAGGGCCTGTGCTGGACACAGGACTGAGGCCTGTGTATGTCTATTCTGGGTCCCTGGAAAACTGATTACATGTAGCTGATACTAGGGCTCTTTTGCCCATGCTCCTACAGATCAGGCTTGGACTGGTCTCGCTCCTCCTGCTGCAGAAGGCCTTTGGTGAAGGACAGCAATCGCCCTGGGTCTCCTTGCAGGGTTTAGGAGGCTAGGGTTTTCTCTGTGGTATTTGCTGGGAAGCTGGGTGCAGCTTTGTGACCCTAGTAGTCTGGACAAAGGTAGGGGTCAGGGCCAGCCTGAGTAGATAGTGAGGCTCTACCTTAACACAAACCGCAGGACCTGGGTCACTCGCTGCTGCCTTGCAGGGAAGCTCATTATATGGCAATTGGCTACGGAAGCAGCCTAGTGTGGAACTCGTCATAGCCGGTCTCTCAACACGCAGTGTGGAAAATGCATGCTTTGGACACTTCTTTTGCAATATGGTTTGTCTGCGTAGCTCCTCTTCCTCCTCCTCTCCCTCCTCCTCCTCTTCCTCTTCTTCCTCCTCTTATTCCTCTTCCTTTTCTTCTTCCTCCTCCTCTTCTTAAGATTTATTTATTTTATGTATATGTGTGTACACTGTAGCTGTTTTCAGACACCAGAAGAGGGCACTGGATCCCATTACAGATGTTTGTGAGCCACCATGTGGTTCCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCCCTGAGCCACCTCTCCAGTCTGTCTGCTGAGTTCTTATTTGGAATTTTTTGGAAGTAGCTTCTAGAAGCAAAGTTAGTACACATAACTTTGACAGTGCCTCTGGTAGAATGGGGTGATGACATAGTGTTGACTTAGAGCAGCAGCTTGCCTGGCAGGTGTGTAAGTGATCAGCTGCCCACAGCCAGGGAGAGCTCCCTGGGAGGAGGCTCTGTGAGCAGAGTGGATGACTGGGCTTACCCCCTCCCCCGCAGTGGTGGACTGTGGTCCGTGGGTGTTATGGCAAGGTATCAGTCCAGACAATCTGTTGCTCCAGCATGCTTACCTTGGTGCCCGGGGGGCAGCTTCAGCATGCCTGAATGTGAGGCTCAAGTGTGAAGTCAGCTGTGTCTCAGCCTGCCCAGTGGTGAAGCCTGCGGCGTTAATCAGACCATCACTTTGACTTCTTGCCCTGAGCAAGACTGTCAGTCTTGTCCCTGTTCTGTCCTTGAGTGAGAGCTAGCAGCCCTGTTAGGCGGGGACCACACCTGTGCTCAGCTCTCCGTGCGCTGAGCTGCTTTGTCCACTTCCCAGGGCCATAGGCTCAGTGTCCCCACCCTCCACTTTGGGGGATCACAAAGGACTGAACATATTGACTTGATTTCTTTTGGATGTAGAGTTCTAGATTAACAAAGCCCTTTGTGTGGCCTGGGATCTTTGGATTCAGATCTTCTGGCTGTACAGGTGGAATCTGTTAATGACTGACAGGATACCATTACTTTTATTGTCTTCCCGACAGGCGGCTTGGCATCTCGCCCAGAGGTGAGCTGATAGGCAGCCTGGCAGCCCCACCCTGTTCACCTGGGCTCCCTGTGGGGTGGCTGTCCCTGGAACCAGCAGGTGGGGTAGTGAGGGCTGTGGTGGTGTGGTGGTGCATATGACCACCTCAGGTGACAGACTCCAGCCCCAAGGCCTCACAAGTTTCTAAGTTCCTCTGACCCCAGAATTAAGAACTGGCGTTCATCTGTGGGGAGACCAGAGCTGTGATGTCTTCTCTCTCCTGGGGTCAGAGGGGTCTGAGACTCTGGAGCTCACAGAATACTGTGCGGCTGGGGGAGGCCATAGACGTTCATCTGTCTGAGAACTCCTCAGAGAAGACTCTGGCCTATGTGTGCAGAACTCCTGATTTTCTCTTTTAGGTTTATTTATTTTATCTTACGTTTGTGAGGTCCTGCCTGGATGTGTGTATGTGTGTCTGGTGCTCCCAGAAGTCAGAAGAGCACACTGCATCCCCTGGAACTAGAGTTAAGAAAGCCCAGGTCCTTTGGAAGAGCAGCCAGTGCTCTTGACCACTGAGCCATCTCCCCAGCCCAGATGCCTGCTTTGCTTTTAAACATTGAATCTACTTGTTTGGAAAGCTTCACCACTGTAATTTTATTCCGATATTAACATGGCACCCATGTGCCTTGCATAGATCATGGAAGGCATGGGGTTTGCGTCTCCTACTCTCTAGGGACTTCTGTCTCACAGGAAGCACATAGCTATCAGGGGGACCCATGCAGATCATGGCAGGCAAAAGCCTTAAGTAGAGGGATCCAGACTGGTAAGGGTCTGGGTCAGGGAGGATCTCTCTGTACAAAGACCAGAGGGAGTAAGATACACCATGCCTGTCCAGGGCACACAGGATAGTGCGTGGCTCAGTGCAGTGGGAGTGCAGTCTGTGCCAGGGCAGAGCACAGGGCAGCCAGGGCCTGTTTGAAAGCTGGAGGCTTCCCTTGTGAGGTACAAGGTTCCTAGAAAGGTACTTCGTTTGTTGTTTTGACACTGGGTCTCATTCTGTAGCTCAGACCAGCTTTGAATTCATAAGAATCCTTCCCTAGTCTTCTGAGTACGAGGGTCACAGGTATAAGCCACCACTCCTGGGAAGGTGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAGAGACCAGAGTCAGGAGACAGCAGGGGTCCTTGGCCTTGAGTCCAAACCACCACCTAGTGTTCCAGGCATGGCAGTAGCTGCAGTGGCCTCCCCACTCTCCCTGGTACTTAGGGCTACTGAGTTTGTTTTGAGTGTAAACCACCCTACCTCCAGTCCACTCCCCAGAGTGCTCTTTCCTTCCCTAAGCCACTAGTTCCTGGAATTGTGGAGATGTTGGGTGCAAAGGTCAGGCTTTTGGGTGAGGAATTGGGACTTGATGATTGGTTTACAGCCCCTGTGCTGGAAATGTGCTTCTTCCTCTGCCCTCTGAGCCTCCTGTGTATGGTATGGGGGTGCATGTAGAGGGGGCTGCTGGGCACAGCTGGAGCCCAACCAAGGAAGGGAGATGAGTCAGTCCCCAGTGTTCCAGCCAGTGCTTCAAGCACCCGACTCGGAACCTAAATGGGAAGGTTCCTAGTGTGCTGGCCTCACAGGCTTCCCGTGGACTCAGCACCAGTGACCGTAGCCCATAACATGGGCTGTACCTCTCAGCAGTGCTTCATCTCTCTCTCTGGGTTCACCCAAAGGTGTGCCATGCACAAGGCAGGGACAGAGAGGCAGAGGCAGACAGAGCTCGAGCGAGCACATTGTCTTGTGCAGTCTAGGTTGGCCTTGCGTTCTTGGTGTAGCTGAGTGAATCTGACTTTGAACATCTGTTCCAATTAGGTCTAGCCCCAGCTAGCCTGGAACTTGAATCTCAAACATGAAATACTGCTTCCTGGGTGCTGGGATTACAGGTATGAGCCAACACGCCCAGGTGCTCATGGACTGTTTTTGAGACAGGGTCTTTTATATCTCAGCTGGCCCTAGACTTGATTTTTGTAGGCTTTGGTAAGATGACTCGGAAGGCAAAGGTGCTTGCTGTGCAAGCCTGGCACCTTGAGCACTAGCCCCAGAACCACATGGAGGTGGGAAGAGAGGACCAGCTCCATCCAGCTGTTCTCTGAGCTTCATGCGTGCTCTCTGGCATGTGCATCCCAAAGTCAGGATGACTTTGATATTTCGATCCTTGCACCTCCACCCCTGAGTGCTGAACTGTACGCCGAGATGGAACCCAGGGCTCCTTCTGCATGCCAGGCCAGCACACTACCAACTAACTGAGCCACAGCCCCACACTTGTATTTTCATTTTGATGAGGGACAAGACTGTAGGGACACTAGGTAGGGCTTCCTCAGGCAACAGGGATCTCTGGGCTCTTAATCTCAGCCATGGTGTCATGCTAGCTCCATGTTTTGTGGTCAGTGCTGGGCCCATTTGTAGCTGCAGTGGGCTCCTGTCACCGGCTCTTTCTGGTATTCAGTGCTTTAGAATTTCTCTTGGCTAGAAATAGCCCCGCCCCAGCTACTCTCCCAAACACCCTTTTGTCCCCAGACCGTTGTCTTTTTCTTGCTGGTTCCTGGAATGGTGGACACACAGGACAACGGCTCCGGGTTGAGCTGGGACACAGGAAGGTCAGCCTGGGAGCTGGGCTTGGTGAAAGCAGGCACCTGAAGCGCAGCCTAGGCTTATGAGGAGGTGATGGTAGGAGCAGCGGTTACACCTTCCCGCCAGTGTCATAGTGTCTCAGGGTTTTGCTGCTTTTAGGGGAGTAGGTGCTAGGGGAAAATCTTCCTCTTCATATGTGGGGAGTGGCCTGGCCCATGGAAGATGTCTTCCTTCCTTCTTTGAGCAAGATCAGGAAAAGTGGTTGGCAAGTCGTACCTAGCAGACCCAGTCTGAGTACAGTGACAACAGCCCACAGTGGCTGTGGGAAGGAAAGACCCCTGTCTGGAAGCTTCTTTGTCCTAGTTCCATGTTGTGGGAAAGCCGAGGTGGGGACAGGGAGGCTTAAATACATGAAGAACCAGAGGCATGCAAGAGTAGCATGGCCTGGATCCCTGGGTAGGGAGAGCAGCCCAGAGCAGAGCCGCCAGCAATGGGGTGGGGAAGGGACACCAGCCTCTAGCCTCTTGACTTACTGAGTAGTAGAGTCTGAAGAGCAGGGAGGTGACTTTGCTGAGGCCTTCTAGGGCAGGAGCGAGCAGAGCAGCAGCCCTGTCAGCTGTTGCCAAGGAGTTCTTGAAACTCTGTATGGACGTTAGGAAACCGTTCTCTGCTGTAGCAGCGTGTGTGTTATACACAGGCCCTGTGTCTGACGTTTGTGCATGTTTGTGGACTCTGAAGATCTTGTTGATGGAGGATCTGGTGGGAGGGCCACGGGGAGCTGGCTGGGCTTCCTGGATAAGATTCCTTAGGCTATAAAGGGAAGGGTGGAGGCTAGGCTAGGCCTGGGAGGATAGATGCTCAGGACTAGTTCTGTGGGGGCTTGAGATCGTAGAAGAGGGTGTAGAATGGGACCTAGTGTACTACCAGGCATACCTAGTAGTACTTAAAATTCCACTAGAACCCATGACCTTCATTACAGAAGTGTCCTCATGTGTGCTGTGACATAGCGGCCTCTGTGGTACCCCCTGGACGCATGCTTCTTTATGTGGTGCAGATGGTAACAGAGAGATGAGCAAACTCCTAGGTACCCTGATGCAGAAAAGCTGGGCAGCTGTATATAGGCAGACCTGGTGCTACCAAATGCCTCGACCACTGTGTGACAGCCACCTGTGCTGGTTATGTCGGGCAGAGCCCACTTGCCTGTTTGTTCTGGGCTCCCGGGAGGGATGGAGGCTCTGGTCTGTGAGCTACACTTTGCTAGCAGATGCTTCGGGCAGTTGAAAAAGCTGGGGCTGGTGCCTCTCTGGAGAGAAGCTAGGAAGCAGTTGGGGAAGGGAAGACCTCAAGGACAGCATTGCCAAAGTTCACTCAAAGAAGCCAGCCAAGGATGTGAGCCACAGCCAGAGTAAAGTGGCAGAGAGCAGAATGGCCCTGCAACTCATGGTCTGAGCACCTTGGCAGTAGCAGGCAGGAGGGAGCCTGGTTCAGCCAGCGACCCCAGGCTGCTCCTGTTGGCCGCTTCCCTCCTAGGTTGAGATCGTGTATAGCAAAGACCTGGCAGATGTTGAGCTCACTTCCTGTCTGCACATTTCCTTTTCCTGCAG
Seq C2 exon
GCCTCTGGCTGTACCTGGCAGGGAGTAGCCTGCCCTGCCTCACGCTGATTGGCTCTCCTAATTTTGGGTACAGGTCAGTTCACCGGGACCTGGAGGCCCAGATTGCCATCGTAACAGAGAGCCGAGCCCTGCAGCAGCAGCTTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002949:ENSRNOT00000004007:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=PU(67.1=65.1)
A:
NA
C2:
PF130911=PLDc_2=FE(28.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]