GgaINT0129142 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:7932060-7932428:-
Coord C1 exon
chr18:7932318-7932428
Coord A exon
chr18:7932236-7932317
Coord C2 exon
chr18:7932060-7932235
Length
82 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
CTTTGTATTTGTATAAACAGGCT
3' ss Score
7.81
Exon sequences
Seq C1 exon
GTTTGTCTTTTACTATTTACGAGGGTCAGATCACTGCCTTGCTCGGTCAAAGTGGGGCTGGAAAGACAACACTGTTAAATGTGCTCAGTGGGCTGACTTCACCTTCTGAAG
Seq A exon
GTAGGATGGGACTGGTGAAGTGGGAAGAGTGAGCTTCAAAGCTGCAAATCCCAGCTCATGGGCTTTGTATTTGTATAAACAG
Seq C2 exon
GCTCTGCAACCATCTATGACTACAAGCTGTCAGAGATAGGAGATAGGGAAGAGATCAGAGAGATGGTCGGTGTTTGCCCACAGTTCAACACACAGTTCGAAGTCCTAACGGTGAAAGAAAATTTGCGAACCTTTGCAGAGATCAAGGGCATCAAATCCAAAGAGGTAGAGCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021399:ENSGALT00000006909:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(25.2=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(39.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCAGATCACTGCCTTGCTC
R:
TGTGTGTTGAACTGTGGGCAA
Band lengths:
182-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]