GgaINT0129151 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:7927776-7928360:-
Coord C1 exon
chr18:7928251-7928360
Coord A exon
chr18:7927932-7928250
Coord C2 exon
chr18:7927776-7927931
Length
319 bp
Sequences
Splice sites
5' ss Seq
AAAGTATCT
5' ss Score
1.3
3' ss Seq
GGCCAAGAGTTTTCATCCTGGTT
3' ss Score
-10.01
Exon sequences
Seq C1 exon
GCTCAGGCATTGAGGACTTCATCCACGCTCTTGAGAGCCAAGATCTCGCAGTGGAAATTACAAGCAAGGAAAATATCACAGAGGAGCTGAAATACAATGGGGCCATTAAA
Seq A exon
GTATCTCGTGAAGGCCAGGTAAGGACTTTTGCTCCCATCCTATCATTTCTTCCTAACAGTGCACTAATTAAGCAAGGTTCCTCCTTCAGCTGTACTGAACATGTATTGGATCAAGCCCCCACAGATAAAGATTAGTGAGTGTTTTAGCCAGTAACCTATGTGCTAGAGGAGACCTTATGATTCCGTTCCTCCACTTGGATGACCTTTGAGGTCCCTCCCAAGCCAAGCCATTCTATGATTCTATTTGTGTTGCACAAAAGGCATAAGTGACATGTATTATTTTAGGCCTGAATTCTCCTGGCCAAGAGTTTTCATCCTG
Seq C2 exon
GTTTCTTGCTCTCTGAAGAGCTACAGGTTTACCATCTTTTGCCACATGGAGGCCATCAACTGCTTCCCAGTGCTTGTGAACATCATCAGCAATGCTCTGCTGAGACCTTTCAGTTCCACCGCACACATCCAGGTCTGGAGCCATCCTTTTACCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021399:ENSGALT00000006909:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(10.1=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(14.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGCATTGAGGACTTCATC
R:
AGAGGTAAAAGGATGGCTCCAGA
Band lengths:
264-583
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]