GgaINT0129158 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:7924276-7924590:-
Coord C1 exon
chr18:7924499-7924590
Coord A exon
chr18:7924397-7924498
Coord C2 exon
chr18:7924276-7924396
Length
102 bp
Sequences
Splice sites
5' ss Seq
TAGGTTTGT
5' ss Score
4.07
3' ss Seq
TGAACCTGTTGGATTTGTAGAAT
3' ss Score
6.04
Exon sequences
Seq C1 exon
CCTTACATCCATTCTGTGGTTTTCGTTTTTCTCCTTCGTTATTTGGAGATGAAATACGGAAGGCCAGTTCTGAGACAGGACCCAATATTTAG
Seq A exon
GTTTGTATAAACACACACACACCGCAGGCACTGCTAGCGTGCTGCTTTCCTTGGAAGACAACACCTTGCCCAAATGCTAAGATGAACCTGTTGGATTTGTAG
Seq C2 exon
AATTCCCCCAAGAAAAGAGAACAGCCATCAGCATCCTGAGGAGCCCGAAGAGGAAGATGAAGATGTTAAAGCTGAAAGAGAAGCAGTGAAAAATGCCATAGCAGCTCCAAGCCAGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021399:ENSGALT00000006909:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.659
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(3.7=41.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTCTGTGGTTTTCGTTTTTCT
R:
CTCCTGGCTTGGAGCTGCTAT
Band lengths:
202-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]