RnoINT0010417 @ rn6
Intron Retention
Gene
ENSRNOG00000004040 | Abca8
Description
ATP binding cassette subfamily A member 8 [Source:RGD Symbol;Acc:1307069]
Coordinates
chr10:98248640-98251771:-
Coord C1 exon
chr10:98251680-98251771
Coord A exon
chr10:98248761-98251679
Coord C2 exon
chr10:98248640-98248760
Length
2919 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGGA
5' ss Score
7
3' ss Seq
GTGGGTGGTTTTGATCTTAGAAT
3' ss Score
4.87
Exon sequences
Seq C1 exon
CCTTTACTTCATGTTTTCATTTTTATTTTTACCCTTCGATGTCTGGAATGGAAGTTTGGAAAGAAAACAATGAGGAAGGATCCCATTTTTAG
Seq A exon
GTAGGAAGAGATCAAACTGGGGGGTTATTTTGTTTCACCCATCAATATTCTTTTTTTTTCTTTCGCGCGTAAACAAGCCAATTAATAATCCTAAGCCACTGTGTCAGGACAGACTGTGGCAGAAGGACATACGGACGTACTGAGGCTAACAGAGGCTCAGATACACAAGCCAAAGAAGACTATGATGTAATGACAGAAACAGAGCCACACTGCTAGCAGTAAAGTCTCTGACGGGGCATGCAGTGCAACCCTGGAAGGCTGGATCTAAAAAACTATCAATGTGAATAGAGGGTTAGTTAAAAAAAAAAAGAAGCTACCATTTGTCCTGTACATAGGCAAGATACATTGGATCAAAGGTTTTATGAGTGGGTTGCTGTCCTTATCCCTCCCCCTGGGAGTCCTGTCTAACTATAAGTGTCCTCTTCAGGGTCCATTTCCCTCACTACTAGGAATCTCAGCTAGAGTCACCCCCTTCAACCCTCTGGGGCCTCTTCCCATCTCAGGCCTCTGGCATGTCCTACAGATTGCCCCCAACTGATTTCCATTCTCTTGTCCAGTCCTCTCCCACCTTCTTCCCCACACCTGATCCCCATCCCCTTTCTGCTCCTACCCAGTTACCTCCCTTGGGTGCCTCTTTGGGTCTCTGGATTGTAGTATGGTTGTCCTTTTTTTCATGCCTCTGACCTCTTATAACTGAGGACGTATCTTGCTTATGTTTCTGGGTCTGGGTTACTTCACTCTGGTTTAAATGGTGTGGAATTGGGTATTTCATGTGTTTTCTTGAGTGTAGTTAGCCTCTGTGGGTTGGAGTTTTCCTTCTAGTATCCTCTATAGGGCTGGTTTAGTGGAAAAGTATTGTTTAAATTGTTTTGTCATGGAATATCTTGGTTTCTCCATCTATGAAAAAGTTTTATCTATAATTGAAAGTTTTTCTTGGTATAATAGCCTGGGCTGACATCTGTGGTGTCTTAGAGTCTGCAAGACCTCTGCCCAGGCTCTTCTAGCTTTTAGAATCTCAGTTGAGAATTTGGGTATTATTCTGATAGGTCTGCCTTTATATGTTACTTGGTCTTTTCCTTTGCAGGTTTTAAAATTCTTCCCTTGTTCTGTGTATTTAGTGCTTTGATGATTGTGTGACAAGTTGATTTTCTTTTGCGGTCCAATCTGTTCAGTGTTCTATAAGCTTCCTGTACATTTATACGCATCTTTTTCTTTAGGTTATGGAAGTTGCCTTCTATGATTTTGTTGAAGATGTTTTCTGGGCCTTTGAGCAGGGAATCTTCTTCTATTCCTATTATTTTTAGGTTTGGTATTTTCATAGCAACCCAAATTTCCTGGAGGCTTTTGTCATGAACATTTTAGATTTTGCCTTTTCTCTGACCACTATATTTATTTATTCTATTGTATCGTCTATACCTGAGATTCTCTCTTCCATCTCTTGTATTCTATTGGTGATGCTTGCTTCTGTATTTCCTGTTTTCTTTCTTAGATTTTTCCACCTCCAGGATTGCCTCAGTTTGTGGTTTGTTTGTTTGGTTATTTTCTTTCTATTTCCCTTTTCAGGTCTTGGCCAGTTTCATTCATATCCTTCACCTATTTGATTGATTATATTTTCCTGTGTTTCTTTATATTTATTTGCTTCCTCTTTTAATGCCTCTACCTTCTTAAATGTATTTTTCTGTATTTCCTTAAGGGATTTATTCATGTCCTCTTTAAAGGCCTCTATCATCTTTAAAAAATTGGATTGATTTCAAATCTTCTTCATGTGCTTCAACTTTCTTAGGATATCCAGGGCTTGCTGTAGTGGGATAGTTGGGCTCTGGTGGCACCATATTGCCCTGGATCCTGTTGACCTCTTTCTTACACTGTCCTTTAGGCATCTGTTTTTCTGTTTTTCCCTGGTATTGGCTGGATGATCCTGATGGCAGCAGAGCTTCAGGTTGGGGTAGCCATGGGCAAGACAATATAGGTCAGGAAGCCTGTCTCTGCTGGACATGCCTCAAGCTGACACCACTAGCAAAGGATTGGTGGGGCAATGTCCCAAGTTGGTTGTTCTTGGAGCTCCATGGGCCTCCACTGAATAGTAGGAGGCTCATAGGGTCATACAGGGGCCTCAGGACTGAAGAACAAGCCCAGAGACACACAGTGGAGCTCAGGGGACAATGCACAACTCATCTCTGTAGGCTGTGTCCCAGGCTTACCAACTGGGATGGTGGGCAGATCAACTGGGATAGGACTGGAAGGGCAGGGTTTCAATCTGGTTGTTTTCGTTGCCCCTGAAGGTTTCCACAATGAAGCAGGATGCTCTTAGGTCCCACAAGGCTCCTCCAGACTGAGGAGAGAGCCCAGAGTTCACTTAATTGACTTAATATTGTGCGTGTCTTATGCAGGTAACCACAGCTGCTCCAAAACATGTTCATGTGTGCAACCATTGTTGTGACCAGAGAATATTTCACAGGATTCCTCCCCATCCTCTGGATCTTGTATTCCTTCTGCCCACTCCTTCCTGTTGTCTCCTGAGCCTTGAGGAAGGGGATGGAACAGATTTTCCATATTTGACTGAGTACTCACAGTACTGATTTCAAATACTCTGGCCCTTTTCCCCCATGAGAACATAGTAGTTTACATTGTTGGGCTATACTATTTTCAAAAGGATTCTTCAGATTATTACTGAGCTATCCACTAGCATTGAAAATCAATTTTTATTCGACTCAGTAGAATAAAAGATAGGTAAAGAGTGGTAGAGCTGTTGACCAGGGCAAGGGGAGTCACATGGAATGAATGTAGACTGTACCAAAGAGAAACATCATACATTTCTCATCTCGTGGTCTCCTGGAGAATGGGTTTTGAACAATGAATCTTTGACGACACAAAGATAAAAGCCACAAGTCAATCATGAGTGGGTGGTTTTGATCTTAG
Seq C2 exon
AATCTCTCCAAGAAACAATGATGTGCATCAAAACCCAGAAGAGCCAGAAGGTGAGGATGAAGATGTTCAAATGGAGAGAATGAGAACAGCGAGTGCCTTGGCATCCACCAGTTTTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004040:ENSRNOT00000005489:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.463
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(5.9=38.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]