GgaINT0132812 @ galGal3
Intron Retention
Gene
ENSGALG00000004364 | ABR
Description
NA
Coordinates
chr19:6273182-6273521:+
Coord C1 exon
chr19:6273182-6273257
Coord A exon
chr19:6273258-6273408
Coord C2 exon
chr19:6273409-6273521
Length
151 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
CCTCTGCTGTCCTCTCGCAGACC
3' ss Score
12.28
Exon sequences
Seq C1 exon
AGCTATTTGTTCCTGCTGTCCTCTGACTACGAGAGGTCCGAATGGAGGGAGGCCATTCAGAAACTGCAGAAAAAAG
Seq A exon
GTAAGTCTTGGCCTGTTGAGGCCCCCATGGGTCATCTTTTCTCTAGCATGCTGGGATGGGTTGGTCCCATGGGATTGCAGCCACTGCCATCCGGTCCCCGGGGCCAGCACTTGTCATGTCCCTCTGAAGCTCCTCTGCTGTCCTCTCGCAG
Seq C2 exon
ACCTCCAGGCCTTTGTGCTGAGCTCGGTGGAGCTGCAGGTGCTGACAGGGTCCTGCTTCAAGCTACGCACTGTCCACAACATCCCGGTCACCAGCAATAAGGATGGTGAGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004364:ENSGALT00000006958:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(14.4=88.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTATTTGTTCCTGCTGTCCT
R:
ACTCACCATCCTTATTGCTGGTG
Band lengths:
187-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]